AT3G49790.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Carbohydrate-binding protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Carbohydrate-binding protein; FUNCTIONS IN: ATP binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: ATPase-like, ATP-binding domain (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: Carbohydrate-binding protein (TAIR:AT1G10150.1); Has 109 Blast hits to 107 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:18468296..18469396 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40341.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 10.13 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||
| Length | 366 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDKLGLSKRG YFDFALKNKK WILLAVSGYG AFRVYHSPSI SQKRKRISKL FTLLLNLIEA ASDSAETVSV ISKDLTEFLR SDSDQIPNSL KQISKIAKSD 101: ELNSSLIRFT QAMTVGLIRG IDDGSGSGFT DRVMDKLFTK SGSGFASAIV GSFARNLVVA LYSSAGDGSN SKLLDAVFSD DGRRLIGDCV QRFVSTAVSV 201: YLDKTSDVNV FDDLFAGLTN PKHEGKVKQT LVTLCNSAVE TFVRASRKPV QLNRSSSCQD SSQTLTVGST KQATWIDRVS SSLSVPSNRK YVVDLTGRVT 301: FETVRSLLEV LIERANGKVE SYVEKVRERG NETRRFVRVK TSLLHSLCLS LCLQIVEAPW MLTPRN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)