AT1G15740.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.434 vacuole 0.306 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Leucine-rich repeat family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Leucine-rich repeat family protein; BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT4G23840.1); Has 38052 Blast hits to 19856 proteins in 856 species: Archae - 6; Bacteria - 8624; Metazoa - 11681; Fungi - 680; Plants - 12072; Viruses - 79; Other Eukaryotes - 4910 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:5411509..5414544 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 63892.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.52 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.08 | ||||||||||||||||||||||||||||||||
| Length | 585 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MILDYIIMGG ACSRKRDQQV EDILNRGVSG KYSKSSSSKW LATSLSRSGS DVKRKNGECP SLMELCVRKI QEDIDRYTKF SDLPRDISQQ IFDELVYSQR 101: LTLKSLEAFR DCAIQDLYLG EYPGVNDDWM DVISSQSTSL LSVDFSGSDI TDSGLVSLKG CTNLESLNFN FCDQISNRGL VHLSGLSNLT SLSFRRNAAI 201: TAQGMRALSN LVNLKKLDLE KCPGIDGGLV HLRALTKLES LNIKWCNCIT DADMEPLSVL TNLRSLQICC SKITDIGISY LKGLNKLNLL NLEGCRHVTA 301: ACLDTLTALA GLMYLNLNRC NFSDSGCEKF SDLINLKILN LGMNNITNSC LVHLKGLTKL ESLNLDSCRI GDEGLVHLSG MLELKSLELS DTEVGSNGLR 401: HLSGLSNLES INLSFTVVTD SGLRKLSGLT SLRTLNLDAR HVTDAGLSAL TSLTGLTHLD LFGARITDSG TNHLRNLKKL QSLEICGGGL TDTGVKNIKD 501: LSSLTLLNLS QNSNLTDKTL ELISGLTGLV SLNVSNSRVS SSGLRHLKPL KNLRSLTLES CKLSANDIRK LQATDLPNLV NFRPE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)