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AT2G04690.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Pyridoxamine 5'-phosphate oxidase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pyridoxamine 5'-phosphate oxidase family protein; FUNCTIONS IN: FMN binding; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular repressor of E1A-stimulated genes (CREG) (InterPro:IPR014631), FMN-binding split barrel (InterPro:IPR012349), FMN-binding split barrel, related (InterPro:IPR009002); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111WS9eggNOG:KOG3374EMBL:AY075623EMBL:AY125556
EMBL:CP002685EnsemblPlants:AT2G04690EnsemblPlants:AT2G04690.1entrez:815012
ExpressionAtlas:Q8RY62Gene3D:2.30.110.10GeneID:815012GO:GO:0005773
GO:GO:0010181GO:GO:0016491Gramene:AT2G04690.1hmmpanther:PTHR13343
hmmpanther:PTHR13343:SF17HOGENOM:HOG000239875IntAct:Q8RY62InterPro:IPR012349
InterPro:IPR014631OMA:KVNETEMPfam:PF13883PhylomeDB:Q8RY62
PIRSF:PIRSF036911Proteomes:UP000006548RefSeq:NP_178546.2SMR:Q8RY62
STRING:3702.AT2G04690.1SUPFAM:SSF50475TAIR:AT2G04690TMHMM:TMhelix
UniGene:At.41279UniProt:Q8RY62
Coordinates (TAIR10) chr2:+:1644628..1646179
Molecular Weight (calculated) 23595.50 Da
IEP (calculated) 7.62
GRAVY (calculated) 0.02
Length 210 amino acids
Sequence (TAIR10)
(BLAST)
001: MELQVLVLRP IFFFFFFVFL TILQQSSSAR VLTITKPDRH DYAASARWLV SQNSWGVLST LSVDHKGAPF GNVVSFSDGL PEKGNGIPYF YLTTLDPTAR
101: NALKDQRASL AISESPLGTC TRDPMNPTCS KLTLTGKLLI LEGGSEEAEV AKKALFTKHP EMMDWPKDHD FRFFKLEIID IFLINWYGGA KPITVDEYLH
201: AKSIKLASFL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)