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AT1G19660.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Wound-responsive family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Wound-responsive family protein; FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: response to wounding, nucleotide-excision repair; EXPRESSED IN: ovule; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF151 (InterPro:IPR003729), UvrB/UvrC protein (InterPro:IPR001943); BEST Arabidopsis thaliana protein match is: bifunctional nuclease in basal defense response 1 (TAIR:AT1G75380.3); Has 886 Blast hits to 886 proteins in 308 species: Archae - 44; Bacteria - 551; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink).
Protein Annotations
EC:3.1.-.-eggNOG:ENOG410IJTWeggNOG:ENOG4110AP6EMBL:AC024609
EMBL:AK317508EMBL:AY035016EMBL:AY059082EMBL:AY088015
EMBL:CP002684EnsemblPlants:AT1G19660EnsemblPlants:AT1G19660.1EnsemblPlants:AT1G19660.2
entrez:838553GeneID:838553Genevisible:Q93VH2GO:GO:0004518
GO:GO:0005634Gramene:AT1G19660.1Gramene:AT1G19660.2hmmpanther:PTHR15160
hmmpanther:PTHR15160:SF3HOGENOM:HOG000029667InParanoid:Q93VH2InterPro:IPR001943
InterPro:IPR003729KEGG:ath:AT1G19660OMA:YFAELYLPaxDb:Q93VH2
Pfam:PF02151Pfam:PF02577Pfam:Q93VH2Pfscan:PS51658
PhylomeDB:Q93VH2PIR:D86329PRIDE:Q93VH2PRO:PR:Q93VH2
PROSITE:PS51658ProteinModelPortal:Q93VH2Proteomes:UP000006548RefSeq:NP_001031068.1
RefSeq:NP_564093.1SMR:Q93VH2STRING:3702.AT1G19660.1SUPFAM:0044805
SUPFAM:SSF103256TAIR:AT1G19660UniGene:At.16184UniProt:Q93VH2
Coordinates (TAIR10) chr1:-:6800361..6802240
Molecular Weight (calculated) 37053.80 Da
IEP (calculated) 9.42
GRAVY (calculated) -0.40
Length 329 amino acids
Sequence (TAIR10)
(BLAST)
001: MRSLQAPVVC PSVRPRQLGV SALLVNCSVS KTRSLRKQFW GNQTKNDKSQ AATVNLRLHL RRYKSIKCLF SSHSDGTGST AENFNENDED YVKSSVLEAV
101: EVKSGPDGFM VKMKDGRQLR CVHNNPQGGN LPNYAPHSAI VLKMEDGTGL LLPIIVLEMP SVLLMAAMTN VQIARPTMYQ VVKDMVDKMG YEVRLVRVTT
201: RVHEAYFAEL YLSKVGDKSD CVSFDLRPSD AINIAVRCKV PIQVNKYLAY SDGMRVIDSG KLSKQTPASD GLLFTELDRP NGQPCFDTKE FDLVRNMMQA
301: VDEERYDEAA EWRDKLGKFQ AKRKLRKYT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)