AT1G19660.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plastid 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Wound-responsive family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Wound-responsive family protein; FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: response to wounding, nucleotide-excision repair; EXPRESSED IN: ovule; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF151 (InterPro:IPR003729), UvrB/UvrC protein (InterPro:IPR001943); BEST Arabidopsis thaliana protein match is: bifunctional nuclease in basal defense response 1 (TAIR:AT1G75380.3); Has 886 Blast hits to 886 proteins in 308 species: Archae - 44; Bacteria - 551; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:6800361..6802240 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 37053.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.42 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.40 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 329 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MRSLQAPVVC PSVRPRQLGV SALLVNCSVS KTRSLRKQFW GNQTKNDKSQ AATVNLRLHL RRYKSIKCLF SSHSDGTGST AENFNENDED YVKSSVLEAV 101: EVKSGPDGFM VKMKDGRQLR CVHNNPQGGN LPNYAPHSAI VLKMEDGTGL LLPIIVLEMP SVLLMAAMTN VQIARPTMYQ VVKDMVDKMG YEVRLVRVTT 201: RVHEAYFAEL YLSKVGDKSD CVSFDLRPSD AINIAVRCKV PIQVNKYLAY SDGMRVIDSG KLSKQTPASD GLLFTELDRP NGQPCFDTKE FDLVRNMMQA 301: VDEERYDEAA EWRDKLGKFQ AKRKLRKYT |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)