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AT1G75380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.657
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : bifunctional nuclease in basal defense response 1
Curator
Summary (TAIR10)
Encodes a nucleases AtBBD1 involved in ABA-mediated callose deposition.
Computational
Description (TAIR10)
bifunctional nuclease in basal defense response 1 (BBD1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF151 (InterPro:IPR003729), UvrB/UvrC protein (InterPro:IPR001943); BEST Arabidopsis thaliana protein match is: Wound-responsive family protein (TAIR:AT1G19660.2); Has 843 Blast hits to 843 proteins in 291 species: Archae - 44; Bacteria - 501; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 193 (source: NCBI BLink).
Protein Annotations
BioGrid:29093EC:3.1.-.-eggNOG:ENOG410IJTWeggNOG:ENOG4110AP6
EMBL:AC023754EMBL:AY054232EMBL:AY066045EMBL:AY087417
EMBL:CP002684EnsemblPlants:AT1G75380EnsemblPlants:AT1G75380.1EnsemblPlants:AT1G75380.2
EnsemblPlants:AT1G75380.3entrez:843874GeneID:843874Genevisible:Q9FWS6
GO:GO:0004518GO:GO:0005634GO:GO:0043565GO:GO:0050832
GO:GO:0090305Gramene:AT1G75380.1Gramene:AT1G75380.2Gramene:AT1G75380.3
hmmpanther:PTHR15160hmmpanther:PTHR15160:SF3HOGENOM:HOG000029667InParanoid:Q9FWS6
InterPro:IPR001943InterPro:IPR003729KEGG:ath:AT1G75380OMA:CPAIRPR
PaxDb:Q9FWS6Pfam:PF02151Pfam:PF02577Pfam:Q9FWS6
Pfscan:PS51658PhylomeDB:Q9FWS6PIR:C96784PRO:PR:Q9FWS6
PROSITE:PS51658ProteinModelPortal:Q9FWS6Proteomes:UP000006548RefSeq:NP_177671.1
RefSeq:NP_849890.1RefSeq:NP_849891.1SMR:Q9FWS6STRING:3702.AT1G75380.1
SUPFAM:0044805SUPFAM:SSF103256TAIR:AT1G75380tair10-symbols:ATBBD1
tair10-symbols:BBD1UniGene:At.23222UniProt:Q9FWS6
Coordinates (TAIR10) chr1:-:28281789..28283631
Molecular Weight (calculated) 36175.70 Da
IEP (calculated) 8.87
GRAVY (calculated) -0.31
Length 325 amino acids
Sequence (TAIR10)
(BLAST)
001: MRSVQAPVVC PAIRPRQVGA CASLVNYTGL KPRSQFWGNR TKGVKSQGTT TTITLRLCNK SIKCVFSSHS DGNGSTAENF NENDEEYVNS SVVEAVEVKS
101: GADGFMVKMR DGRQLRCVHN NPQGGHLPDY APHPAIVLKM EDGTGLLLPI IVLEMPSVLL MAAMTNVQIA RPTMYQVVKE MVDKMGYEVR LVRVTKRVHE
201: AYFAQLFLSK VGNASECVSF DLRPSDAINI AVRCKIPIQV NKYLAYSDGM RVIESGKIST PAPASDGLLF TEQDRPNGQA CLDTKEFNIL SKMMQAVDEE
301: RYDEAAEWRD KLGQFRAKRN LRKYT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)