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AT4G13830.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : DNAJ-like 20
Curator
Summary (TAIR10)
DnaJ-like protein (J20); nuclear gene
Computational
Description (TAIR10)
DNAJ-like 20 (J20); FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding, response to stress; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: Molecular chaperone Hsp40/DnaJ family protein (TAIR:AT4G39960.1); Has 22675 Blast hits to 22673 proteins in 3230 species: Archae - 176; Bacteria - 9459; Metazoa - 3759; Fungi - 2142; Plants - 2075; Viruses - 8; Other Eukaryotes - 5056 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0484eggNOG:KOG0712EMBL:CP002687EnsemblPlants:AT4G13830
EnsemblPlants:AT4G13830.1entrez:827017ExpressionAtlas:Q3EA41Gene3D:1.10.287.110
GeneID:827017Gramene:AT4G13830.1hmmpanther:PTHR24078hmmpanther:PTHR24078:SF222
HOGENOM:HOG000237394InterPro:IPR001623InterPro:IPR018253PaxDb:Q3EA41
Pfam:PF00226Pfscan:PS50076PRIDE:Q3EA41PRINTS:PR00625
PROSITE:PS00636PROSITE:PS50076ProteinModelPortal:Q3EA41Proteomes:UP000006548
RefSeq:NP_849376.1scanprosite:PS00636SMART:SM00271SMR:Q3EA41
STRING:3702.AT4G13830.2SUPFAM:SSF46565TAIR:AT4G13830tair10-symbols:J20
UniGene:At.21661UniProt:Q3EA41
Coordinates (TAIR10) chr4:+:8011518..8011985
Molecular Weight (calculated) 18289.40 Da
IEP (calculated) 9.43
GRAVY (calculated) -0.83
Length 155 amino acids
Sequence (TAIR10)
(BLAST)
001: MKCYKSSSIL STNHHPFFYK QQPISSLQPT SIPTTISYPT RTRFSSTRIQ SRLTHDDPVK QSEDLSFYDL LGVTESVTLP EIKQAYKQLA RKYHPDVSPP
101: DRVEEYTDRF IRVQEAYETL SDPRRRVLYD RDLSMGFSFS FSGRRQNRYD QVINY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)