AT5G53350.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
FP Images |
Arabidopsis cell culture (mitochondrial marker)
Arabidopsis cell culture (plastidal marker)
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : CLP protease regulatory subunit X | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
CLP protease regulatory subunit CLPX mRNA, nuclear gene | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
CLP protease regulatory subunit X (CLPX); FUNCTIONS IN: unfolded protein binding, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein folding; LOCATED IN: mitochondrion, mitochondrial matrix; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), Clp protease, ATP-binding subunit ClpX (InterPro:IPR004487); BEST Arabidopsis thaliana protein match is: ATP-dependent Clp protease (TAIR:AT1G33360.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr5:+:21644060..21647503 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 61967.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.91 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 579 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAAALRSNTS RETASLTLSH FRYFIFNRIH TARTATSPPH CNHRSKSDEK FPYKISSLGT SFLDNRGGGE RRNSTKCYAA QKKLSGVGSS VVILSSQGDP 101: PDLWQPPGDG VSVRVNGSSV NLGRGGGGGG SSPGGPGNGT GSNSKEDCWG GSNLGSDFPT PKEICKGLNK FVIGQERAKK VLSVAVYNHY KRIYHESSQK 201: RSAGETDSTA AKPADDDMVE LEKSNILLMG PTGSGKTLLA KTLARFVNVP FVIADATTLT QAGYVGEDVE SILYKLLTVA DYNVAAAQQG IVYIDEVDKI 301: TKKAESLNIS RDVSGEGVQQ ALLKMLEGTI VNVPEKGARK HPRGDNIQID TKDILFICGG AFVDIEKTIS ERRHDSSIGF GAPVRANMRA GGVTNAAVAS 401: NLMETVESSD LIAYGLIPEF VGRFPVLVSL SALTENQLMQ VLTEPKNALG KQYKKMYQMN SVKLHFTESA LRLIARKAIT KNTGARGLRA LLESILMDSM 501: YEIPDEGTGS DMIEAVVVDE EAVEGEGRRG SGAKILRGKG ALARYLSETN SKDSPQTTKE GSDGETEVEA EIPSVVASM |
||||||||||||||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)