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AT4G08900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31911558 (2020): mitochondrion
  • PMID:31871212 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23750852 (2013): mitochondrion
  • PMID:22540835 (2012): mitochondrion
  • PMID:21841088 (2011): mitochondrion
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : arginase
Curator
Summary (TAIR10)
Encodes an arginase, likely to be involved in polyamine biosynthesis in pollen.
Computational
Description (TAIR10)
arginase; FUNCTIONS IN: arginase activity, cobalt ion binding, agmatinase activity; INVOLVED IN: defense response to bacterium, arginine catabolic process, polyamine metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 8 plant structures; CONTAINS InterPro DOMAIN/s: Ureohydrolase (InterPro:IPR006035), Ureohydrolase, manganese-binding site (InterPro:IPR020855); BEST Arabidopsis thaliana protein match is: Arginase/deacetylase superfamily protein (TAIR:AT4G08870.1); Has 9226 Blast hits to 9224 proteins in 1712 species: Archae - 292; Bacteria - 4928; Metazoa - 419; Fungi - 376; Plants - 74; Viruses - 0; Other Eukaryotes - 3137 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G08900-MONOMERBioCyc:MetaCyc:AT4G08900-MONOMERBioGrid:11767EC:3.5.3.1
eggNOG:COG0010eggNOG:KOG2964EMBL:AF128396EMBL:AL161513
EMBL:AY052276EMBL:AY061914EMBL:CP002687EMBL:U15019
EnsemblPlants:AT4G08900EnsemblPlants:AT4G08900.1entrez:826468Gene3D:3.40.800.10
GeneID:826468Genevisible:P46637GO:GO:0000050GO:GO:0004053
GO:GO:0005739GO:GO:0006527GO:GO:0009507GO:GO:0042742
GO:GO:0050897Gramene:AT4G08900.1gramene_pathway:3.5.3.1gramene_pathway:3.5.3.11
gramene_pathway:ARG-PRO-PWYgramene_pathway:CITRULBIO-PWYgramene_pathway:PWY-40gramene_pathway:PWY-4984
gramene_pathway:PWY-6305gramene_plant_reactome:1119289gramene_plant_reactome:1119495gramene_plant_reactome:6874410
gramene_plant_reactome:6877409hmmpanther:PTHR11358hmmpanther:PTHR11358:SF32HOGENOM:HOG000204320
InParanoid:P46637IntAct:P46637InterPro:IPR006035InterPro:IPR020855
InterPro:IPR023696KEGG:ath:AT4G08900KO:K01476OMA:GAPMEDT
PANTHER:PTHR11358PaxDb:P46637Pfam:P46637Pfam:PF00491
Pfscan:PS51409PhylomeDB:P46637PIR:F85089PIRSF:PIRSF036979
PRIDE:P46637PRO:PR:P46637PROSITE:PS01053PROSITE:PS51409
ProteinModelPortal:P46637Proteomes:UP000006548Reactome:R-ATH-351143RefSeq:NP_192629.1
scanprosite:PS01053SMR:P46637STRING:3702.AT4G08900.1SUPFAM:SSF52768
TAIR:AT4G08900UniGene:At.1554UniPathway:UPA00158UniProt:P46637
Coordinates (TAIR10) chr4:+:5703499..5705180
Molecular Weight (calculated) 37346.90 Da
IEP (calculated) 6.52
GRAVY (calculated) -0.19
Length 342 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRIIGRKGI NYIHRLNSAS FTSVSASSIE KGQNRVIDAS LTLIRERAKL KGELVRLLGG AKASTSLLGV PLGHNSSFLQ GPAFAPPRIR EAIWCGSTNS
101: ATEEGKELKD PRVLTDVGDV PVQEIRDCGV DDDRLMNVIS ESVKLVMEEE PLRPLVLGGD HSISYPVVRA VSEKLGGPVD ILHLDAHPDI YDCFEGNKYS
201: HASSFARIME GGYARRLLQV GIRSINQEGR EQGKRFGVEQ YEMRTFSKDR PMLENLKLGE GVKGVYISID VDCLDPAFAP GVSHIEPGGL SFRDVLNILH
301: NLQADVVGAD VVEFNPQRDT VDGMTAMVAA KLVRELAAKI SK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)