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AT4G05530.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
peroxisome 1.000
ASURE: peroxisome
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31871212 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:24130194 (2013): peroxisome
  • PMID:23750852 (2013): mitochondrion
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:21311031 (2011): mitochondrion
  • PMID:19329564 (2009): peroxisome
  • PMID:18931141 (2008): peroxisome
  • PMID:17951448 (2007): peroxisome
FP Images

onion epidermal cell layer (peroxisomal marker)

At4g-GFP-05530
(full-length)
RFP-peroxisomal markeroverlay

Images by John Bussel
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : indole-3-butyric acid response 1
Curator
Summary (TAIR10)
Encodes a peroxisomal member of the short-chain dehydrogenase/reductase (SDR) family of enzymes. Loss of IBR1 function causes increased resistance to indole-3-butyric acid without affecting plant responses to IAA, NAA, and 2,4-D. This enzyme may be responsible for catalyzing a dehydrogenation step in the beta-oxidation-like conversion of IBA to IAA.
Computational
Description (TAIR10)
indole-3-butyric acid response 1 (IBR1); FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: root hair elongation, indolebutyric acid metabolic process, response to indolebutyric acid stimulus; LOCATED IN: peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G29150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G05530-MONOMEREC:1.1.-.-eggNOG:COG1028eggNOG:KOG0725
EMBL:AF147263EMBL:AL161503EMBL:AY035106EMBL:AY087807
EMBL:AY113900EMBL:CP002687EnsemblPlants:AT4G05530EnsemblPlants:AT4G05530.1
entrez:825905Gene3D:3.40.50.720GeneID:825905Genevisible:Q9S9W2
GO:GO:0005777GO:GO:0006631GO:GO:0016491GO:GO:0048767
GO:GO:0080024GO:GO:0080026Gramene:AT4G05530.1gramene_pathway:1.1.-.-
gramene_pathway:PWY-6066hmmpanther:PTHR24322hmmpanther:PTHR24322:SF502InterPro:IPR002347
InterPro:IPR016040InterPro:IPR020904KEGG:ath:AT4G05530KO:K11147
OMA:YADPQVEPANTHER:PTHR24322PaxDb:Q9S9W2Pfam:PF00106
Pfam:Q9S9W2PhylomeDB:Q9S9W2PIR:E85069PRIDE:Q9S9W2
PRINTS:PR00080PRINTS:PR00081PRO:PR:Q9S9W2ProMEX:Q9S9W2
PROSITE:PS00061ProteinModelPortal:Q9S9W2Proteomes:UP000006548Reactome:R-ATH-5365859
RefSeq:NP_567300.1scanprosite:PS00061SMR:Q9S9W2STRING:3702.AT4G05530.1
SUPFAM:SSF51735TAIR:AT4G05530tair10-symbols:IBR1tair10-symbols:SDRA
UniGene:At.23984UniProt:Q9S9W2
Coordinates (TAIR10) chr4:+:2816462..2818074
Molecular Weight (calculated) 26766.40 Da
IEP (calculated) 8.68
GRAVY (calculated) 0.12
Length 254 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKKLPRRLE GKVAIVTAST QGIGFGITER FGLEGASVVV SSRKQANVDE AVAKLKSKGI DAYGIVCHVS NAQHRRNLVE KTVQKYGKID IVVCNAAANP
101: STDPILSSKE AVLDKLWEIN VKSSILLLQD MAPHLEKGSS VIFITSIAGF SPQGAMAMYG VTKTALLGLT KALAAEMAPD TRVNAVAPGF VPTHFASFIT
201: GSSEVREGIE EKTLLNRLGT TGDMAAAAAF LASDDSSYIT GETLVVAGGM PSRL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)