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AT4G04470.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 1.000
ASURE: peroxisome
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:19334764 (2009): plasma membrane
  • PMID:18931141 (2008): peroxisome
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein
Curator
Summary (TAIR10)
22-kD peroxisomal membrane protein, an integral membrane protein embedded in the lipid bilayer.
Computational
Description (TAIR10)
PMP22; CONTAINS InterPro DOMAIN/s: Mpv17/PMP22 (InterPro:IPR007248); BEST Arabidopsis thaliana protein match is: Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (TAIR:AT4G14305.1); Has 1209 Blast hits to 1209 proteins in 184 species: Archae - 0; Bacteria - 0; Metazoa - 463; Fungi - 362; Plants - 267; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111SYHeggNOG:KOG1944EMBL:AF076243EMBL:AJ006053
EMBL:AL161500EMBL:BT003055EMBL:CP002687EnsemblPlants:AT4G04470
EnsemblPlants:AT4G04470.1entrez:825777ExpressionAtlas:Q9ZS51GeneID:825777
Genevisible:Q9ZS51GO:GO:0005778GO:GO:0016021Gramene:AT4G04470.1
hmmpanther:PTHR11266hmmpanther:PTHR11266:SF15HOGENOM:HOG000238919InParanoid:Q9ZS51
InterPro:IPR007248KEGG:ath:AT4G04470KO:K13347OMA:QYTSWTF
PANTHER:PTHR11266PaxDb:Q9ZS51Pfam:PF04117Pfam:Q9ZS51
PhylomeDB:Q9ZS51PIR:T51590PRIDE:Q9ZS51PRO:PR:Q9ZS51
Proteomes:UP000006548RefSeq:NP_192356.1STRING:3702.AT4G04470.1TAIR:AT4G04470
tair10-symbols:PMP22TMHMM:TMhelixUniGene:At.20045UniProt:Q0WTY9
UniProt:Q9ZS51
Coordinates (TAIR10) chr4:-:2227963..2229226
Molecular Weight (calculated) 21720.20 Da
IEP (calculated) 11.29
GRAVY (calculated) 0.19
Length 190 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSSPPKKTT LQRYLSQLQQ HPLRTKAITA GVLSGVSDVV SQKLSGIQKI QLRRVLLKVI FAGGFLGPAG HFFHTYLDKF FKGKKDTQTV AKKVILEQLT
101: LSPLNHLLFM IYYGVVIERT PWTLVRERIK KTYPTVQLTA WTFFPVVGWI NYKYVPLHFR VILHSLVAFF WGIFLTLRAR SMTLALAKAK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)