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AT3G49590.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Autophagy-related protein 13
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Autophagy-related protein 13; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 13 (InterPro:IPR018731); BEST Arabidopsis thaliana protein match is: Autophagy-related protein 13 (TAIR:AT3G18770.1); Has 1957 Blast hits to 674 proteins in 207 species: Archae - 0; Bacteria - 87; Metazoa - 293; Fungi - 173; Plants - 114; Viruses - 5; Other Eukaryotes - 1285 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Y4BPeggNOG:KOG4573EMBL:AK227226EMBL:AK316744
EMBL:AL132964EMBL:CP002686EnsemblPlants:AT3G49590EnsemblPlants:AT3G49590.1
EnsemblPlants:AT3G49590.2entrez:824121ExpressionAtlas:Q9SCK0GeneID:824121
Genevisible:Q9SCK0GO:GO:0005776GO:GO:0006914GO:GO:0015031
GO:GO:0031410GO:GO:1990316hmmpanther:PTHR13430hmmpanther:PTHR13430:SF3
HOGENOM:HOG000239305InterPro:IPR018731iPTMnet:Q9SCK0PaxDb:Q9SCK0
Pfam:PF10033PhylomeDB:Q9SCK0PIR:T46236ProteinModelPortal:Q9SCK0
Proteomes:UP000006548RefSeq:NP_190528.1RefSeq:NP_850673.1SMR:Q9SCK0
STRING:3702.AT3G49590.3TAIR:AT3G49590UniGene:At.35585UniProt:Q9SCK0
Coordinates (TAIR10) chr3:+:18377892..18380104
Molecular Weight (calculated) 66567.70 Da
IEP (calculated) 9.39
GRAVY (calculated) -0.58
Length 603 amino acids
Sequence (TAIR10)
(BLAST)
001: MDFPENLPSD IGRLEQIVSH FFPKALHIVL NSRIPSLQSR GRTRERLSGL NVRKSDKWFN LVMGDRPAAL EKLHSWHRNI LDSMIIDIIL VHPISNDNLD
101: DDDDHSDSVV RSAETVIERW VVQYENPLIM SPQSSDSATR YQKVYKKSII LLRSLYAQTR LLPAYRVSRQ LSSSLASSGY DLIYKVSSFS DIFSGPVTET
201: MKEFRFAPVE VPPGRLCASV TYRSDLSDFN LGAHITLPPR IITDYVGSPA TDPMRFFPSP GRSVEGHSFT GRAGRPPLTG SSAERPHSWT SGFHRPPAQF
301: ATPNQSFSPA QSHQLSPGLH DFHWSRTDAF GDNHQLSPPF SPSGSPSTPR YISGGNSPRI NVRPGTAPVT IPSSATLNRY VSSNFSEPGR NPLPPFSPKS
401: TRRSPSSQDS LPGIALYRSS RSGESPSGLM NQYPTQKLSK DSKYDSGRFS GVLSSSDSPR FAFSRSPSRL SSQDDLDDPD CSCPFDFDDV DESGLQYSHS
501: LDRRKTSSSI SQSLPLGRRS SQDAAVGVLV HMLKTAPPLR QDSSTYMASM SGVQREGSVS GTESEFSMAR STSDALEELR NYKQLKDLLL SKSKSGSGPT
601: RVH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)