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AT2G35680.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.945
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Phosphotyrosine protein phosphatases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Phosphotyrosine protein phosphatases superfamily protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation, dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Dual-specific/protein-tyrosine phosphatase, conserved region (InterPro:IPR000387), Dual specificity phosphatase, catalytic domain (InterPro:IPR000340), Dual specificity phosphatase, subgroup, catalytic domain (InterPro:IPR020422); BEST Arabidopsis thaliana protein match is: Phosphotyrosine protein phosphatases superfamily protein (TAIR:AT5G56610.1); Has 1976 Blast hits to 1976 proteins in 288 species: Archae - 41; Bacteria - 150; Metazoa - 1097; Fungi - 157; Plants - 204; Viruses - 23; Other Eukaryotes - 304 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G35680-MONOMEREC:3.1.3.16EC:3.1.3.48eggNOG:ENOG4111IMR
eggNOG:KOG1719EMBL:AC006068EMBL:AJ574761EMBL:AY054558
EMBL:AY065219EMBL:BT008574EMBL:CP002685EnsemblPlants:AT2G35680
EnsemblPlants:AT2G35680.1entrez:818137Gene3D:3.90.190.10GeneID:818137
Genevisible:Q9ZQP1GO:GO:0004725GO:GO:0008138Gramene:AT2G35680.1
hmmpanther:PTHR10159hmmpanther:PTHR10159:SF358HOGENOM:HOG000238257InParanoid:Q9ZQP1
InterPro:IPR000340InterPro:IPR000387InterPro:IPR016130InterPro:IPR020422
InterPro:IPR024950InterPro:IPR029021KEGG:ath:AT2G35680OMA:HTDQKIP
PANTHER:PTHR10159PaxDb:Q9ZQP1Pfam:PF00782Pfam:Q9ZQP1
Pfscan:PS50054Pfscan:PS50056PhylomeDB:Q9ZQP1PIR:F84771
PRO:PR:Q9ZQP1PROSITE:PS00383PROSITE:PS50054PROSITE:PS50056
ProteinModelPortal:Q9ZQP1Proteomes:UP000006548RefSeq:NP_565816.1scanprosite:PS00383
SMART:SM00195SMR:Q9ZQP1STRING:3702.AT2G35680.1SUPFAM:SSF52799
TAIR:AT2G35680UniGene:At.23626UniGene:At.71304UniProt:Q9ZQP1
Coordinates (TAIR10) chr2:-:14997004..14998590
Molecular Weight (calculated) 37550.20 Da
IEP (calculated) 7.68
GRAVY (calculated) -0.02
Length 337 amino acids
Sequence (TAIR10)
(BLAST)
001: MYIKELTETD EEKRERSVED NVDDGDKAVL VSRGNVIVLT TKRALVGVGA RALFYPTLVY NVVRNKLESE FRWWDRVAEF ILLGAVPFPS DVPQLKELGV
101: CGVITLNEPY ETLVPSSLYK SYCIDHLVIA TRDYCFAPSM EAICQAVEFI HRNASLGKTT YVHCKAGRGR STTIVICYLV QHKNMTPEAA YSYVRSIRPR
201: VLLAAAQWKA VVEYYHVKVL NTQSCLTDAT SALIPRNVKQ VCSGNVVVFD DGSMVVVTHS DLEGYNDDDS RSRRSVKVNG NELWAAAADL SMVYRVKVVG
301: QAAMARISCL WLGLREDQKL SGKNLSMGGI SVDISVY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)