AT1G22930.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:peroxisome 0.939 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : T-complex protein 11 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
T-complex protein 11; CONTAINS InterPro DOMAIN/s: T-complex 11 (InterPro:IPR008862); BEST Arabidopsis thaliana protein match is: T-complex protein 11 (TAIR:AT4G09150.1); Has 9929 Blast hits to 7090 proteins in 817 species: Archae - 19; Bacteria - 1454; Metazoa - 4175; Fungi - 699; Plants - 382; Viruses - 14; Other Eukaryotes - 3186 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:8117521..8121854 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 127630.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.06 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.52 | ||||||||||||||||||||||||||||||||
| Length | 1131 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEEDRGEAIV LDISPEINNT PAVMMRVPRR IRERLLSDCS NKKTVSSVQD IEDKLLHAHL RRQQFYHNVS RKARAKPRSP SRSSDEELGQ RIEARLLAAE 0101: QKRLEILAKA QMRLAKLDEL RQAAKTSVEI RSERERVKLG TQVESRVQKA EANRMKILKA SHQKRACAKE RTSQSMMRRM ARESKYKERV RASINQKRVA 0201: AEKKRLGLLE AEKKKARARV QQVRHVANSV SNQREIERSK MRDKLEDKLQ RAKRYRSEFL RQRRRQRDSI SLYCDMMQED ADLLSRKLSR CWRCFVRQKR 0301: TTLDLAKAYD GLKINESLPF EQLAMLLESL NTLKTVKSLL DRLEIRLEAS KNVTTVSQPS ILDNIDHLLK RVATPRRKAT PSTLRSRKGK KVSSVRNVAG 0401: TSVKMSRYPV RVVLSAFMIL GHPDAVFNGQ GDQEAALNNA AKGFVRELKL LINVIQEGPV QVSGGESKHR TLRSQLDLFD KAWCSFLNSF VIWKVKDARL 0501: LEDDLVRAAC QLELSMIQKC KLTPEGVDTM LTHDKKAIQM QVTQDQELLT EKVRHLSGVA GVERMESALL ETRTKYFQAK EDGSPMANQL AHFFSPSPAS 0601: SPVQSVSSSS SRSKDSIGVE GSNRVNRSLL KDDTPPSSGP SRVSNGTVDE VSNQNELMVN EFLHDGNLNF PGGSTVKDEE DNLKRRIKET MERAFWDNVM 0701: ESMKLEKPDY SCISNLMKEV SDELCQMVPD SWKVEITETI DLDILSQLLN SGTLDIDYLG KMLEFALATL RKLSAPANDR ENESTHRDLL KELHRLCEAE 0801: DESGNFRAVA IVKGIRFILE QIQELKREIG IGRIAIMKPF LQGPAGFDYL TKAFEKRYGP PTQAYESLPV TRRWISTLLS SKEEWEEHNN TLSALNVVER 0901: SSMGISLKTG GSFLSPVNTT SKSTVMDTAG QLSECKGERV DLAVRLGLLK LVNQVAGLTP EVLPETFQLN LFRVRDIQAE IQNIIVVTTS LLIWRQMLAK 1001: SESETESMAK KLLELLDGKE GAGLTEIIET TMSEEDGEKK KMMRGLLGKS LGEGNTVYER VTSCIYKAAR GALLAGNGEN GKRMVETEMK KVGGGGGLKE 1101: RVLETARALG VVACVSVRVH GPWLTQLMPQ H |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)