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AT3G16940.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : calmodulin binding;transcription regulators
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
calmodulin binding;transcription regulators; FUNCTIONS IN: calmodulin binding, transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), CG-1 (InterPro:IPR005559), Cell surface receptor IPT/TIG (InterPro:IPR002909), IQ calmodulin-binding region (InterPro:IPR000048), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: calmodulin binding;transcription regulators (TAIR:AT4G16150.1); Has 5766 Blast hits to 3807 proteins in 309 species: Archae - 13; Bacteria - 199; Metazoa - 3382; Fungi - 247; Plants - 659; Viruses - 23; Other Eukaryotes - 1243 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XS5MeggNOG:KOG0520EMBL:AB026636EMBL:AK222107
EMBL:AY510027EMBL:CP002686EnsemblPlants:AT3G16940EnsemblPlants:AT3G16940.1
entrez:820950Gene3D:1.25.40.20GeneID:820950Genevisible:Q9LSP8
GO:GO:0003677GO:GO:0005634GO:GO:0006351hmmpanther:PTHR23335
hmmpanther:PTHR23335:SF3HOGENOM:HOG000240102InParanoid:Q9LSP8InterPro:IPR000048
InterPro:IPR002110InterPro:IPR002909InterPro:IPR005559InterPro:IPR014756
InterPro:IPR020683iPTMnet:Q9LSP8KEGG:ath:AT3G16940ncoils:Coil
OMA:NIPATEGPaxDb:Q9LSP8Pfam:PF00612Pfam:PF01833
Pfam:PF03859Pfam:PF12796Pfam:Q9LSP8Pfscan:PS50088
Pfscan:PS50096Pfscan:PS50297Pfscan:PS51437PhylomeDB:Q9LSP8
PRIDE:Q9LSP8PRO:PR:Q9LSP8PROSITE:PS50088PROSITE:PS50096
PROSITE:PS50297PROSITE:PS51437ProteinModelPortal:Q9LSP8Proteomes:UP000006548
RefSeq:NP_188319.2SMART:SM00015SMART:SM00248SMART:SM01076
SMR:Q9LSP8STRING:3702.AT3G16940.1SUPFAM:SSF48403SUPFAM:SSF81296
TAIR:AT3G16940UniGene:At.70388UniProt:Q9LSP8
Coordinates (TAIR10) chr3:+:5781959..5785985
Molecular Weight (calculated) 96183.00 Da
IEP (calculated) 8.05
GRAVY (calculated) -0.53
Length 845 amino acids
Sequence (TAIR10)
(BLAST)
001: MDGDGLGRLI GSEIHGFHTL QDLDVQTMLE EAKSRWLRPN EIHAILYNPK YFTINVKPVN LPNSGRIILF DRKMLRNFRK DGHNWKKKKD GRTVKEAHEH
101: LKVGNEERIH VYYAHGEDNT TFVRRCYWLL DKARENIVLV HYRDTQEAAT TSGDSISSPI SVSEQTFPNR VAAEDIDTVV RNHDISLHDI NTLDWDELLV
201: PTDLNNQSAP TVDNLSYFTE PLQNAANGTA EHGNATVADG SLDALLNDGP QSRESFGRWM NSFISESNGS LEDPSFEPMV MPRQDPLAPQ AVFHSHSNIP
301: EQVFNITDVS PAWAYSSEKT KILVTGFLHD SYQHLERSNL YCVCGDFCVP AEYLQAGVYR CIIPPHSPGM VNLYLSADGH KPISQCFRFE HRAVPVLDKT
401: VPEDNQDSKW EEFEFQVRLS HLLFTSSNKL NVLSSKISPH NLRDAKKLAS KTNHLLNSWA YLVKSIQGNK VSFDQAKDHL FELSLKNRLK EWLMEKVLEG
501: RNTLDYDSKG LGVIHLCASL GYTWSVQLFS LSGLSLNFRD KQGWTALHWA AYYGREKMVA ALLSAGARPN LVTDSTKDNL GGCMAADLAQ QNGYDGLAAY
601: LAEKCLVAQF RDMKIAGNIT GDLEACKAEM LNQGTLPEDE QSLKDALAAY RTAAEAAARI QGAFREKALK AARSSVIQFA NKEEEAKSII AAMKIQNAFR
701: KYDTRRKIEA AYRIQCRFQT WKIRREYLNM RRQAIRIQAA FRGLQARRQY KKILWSVGVL EKAVLRWRQK RKGFRGLQVA AEEDSPGEAQ EDFYKTSQRQ
801: AEERLERSVV RVQAMFRSKK AQQDYRRMKL THEEAQLEYG CLEDI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)