AT3G49800.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : BSD domain-containing protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
BSD domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain-containing protein (TAIR:AT5G65910.1); Has 225 Blast hits to 208 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 15; Fungi - 3; Plants - 201; Viruses - 2; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:18471957..18473676 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47513.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.14 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.54 | ||||||||||||||||||||||||||||||||
| Length | 428 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAWLARSIAN SLKIDEEEYD QKETIKTNSI ENSGSDQPSS PSVLQTQSPR GVKEDISELT KTLRSQLWGV ASFLAPPPSS SDTADHVDEE TRKSSDLAEG 101: DEDLIAGIRN DFVEIGGRFK TGISKLSGNL PVSKFTNMAS NFLQLGSEGV DSKNRDVAIG NAIGVTEEVV LFARDLALHP ETWLDFPFPD EDDNFDDFEM 201: TDAQYEHALA VENLASSLAA LRIELCPAYM SEYCFWRIYF VLVHPIFSKH DALTLSTPQV LESRALLSHE LLRKRNKDTV VVPESSDRGA DSENVEPLFQ 301: PTNPSPKSEP EPVKTITVET IHSAERSEFE TEKHTVETKE VQVVDKPVIE ERPAPAYHDK PVQSLVTGSS PRVIDVQVDD DADDWLKDED NAGTVSATTN 401: HLVQDVDEDV SFSDLEEDDD DVPVSYKK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)