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AT2G02370.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.907
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SNARE associated Golgi protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SNARE associated Golgi protein family; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: SNARE associated Golgi protein family (TAIR:AT1G12450.1); Has 2420 Blast hits to 2420 proteins in 703 species: Archae - 6; Bacteria - 1288; Metazoa - 120; Fungi - 130; Plants - 226; Viruses - 0; Other Eukaryotes - 650 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0398eggNOG:ENOG410IHXMEMBL:AC005312EMBL:AF361611
EMBL:AY059151EMBL:AY143883EMBL:CP002685EnsemblPlants:AT2G02370
EnsemblPlants:AT2G02370.1EnsemblPlants:AT2G02370.2entrez:814768GeneID:814768
GO:GO:0016021Gramene:AT2G02370.1Gramene:AT2G02370.2hmmpanther:PTHR12677
hmmpanther:PTHR12677:SF25HOGENOM:HOG000070846InterPro:IPR015414InterPro:IPR032816
KEGG:ath:AT2G02370ncoils:CoilOMA:KILFPIMPANTHER:PTHR12677
Pfam:PF09335PhylomeDB:Q9ZVQ5PIR:H84435Proteomes:UP000006548
RefSeq:NP_001077870.1RefSeq:NP_565283.1TAIR:AT2G02370TMHMM:TMhelix
UniGene:At.12988UniProt:Q9ZVQ5
Coordinates (TAIR10) chr2:+:621841..623084
Molecular Weight (calculated) 36596.20 Da
IEP (calculated) 9.73
GRAVY (calculated) 0.38
Length 320 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNPLKESRE DIANSTPHMR DNEYVRLVVA HEASPAETVL SLSQSEVQSK KFMWWLKALG ICAVALLLTL VFGKWGVPFV FQKVLIPILQ WEATAFGRPM
101: LAIVLVVSLA LFPVFLIPSG PSMWLAGMIF GYGLGFVIIM VGTTIGMVLP YLIGLMFRDR LHQWLKRWPR QAAVLRLAAE GSWFHQFRVV AIFRVSPFPY
201: TIFNYAIVVT SMRFWPYFFG SIAGMIPEAF IYIYSGRLIR TFADVQYGHQ RLTTVEIVYN VISLVIAVVT TVAFTVYAKR ALRELQNAEA NEDEEVQVRK
301: VRFEMKNVVQ HEEDNHQRLP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)