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AT4G18880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : heat shock transcription factor A4A
Curator
Summary (TAIR10)
member of Heat Stress Transcription Factor (Hsf) family
Computational
Description (TAIR10)
heat shock transcription factor A4A (HSF A4A); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to chitin; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT5G45710.1); Has 2263 Blast hits to 2244 proteins in 239 species: Archae - 2; Bacteria - 4; Metazoa - 360; Fungi - 491; Plants - 856; Viruses - 0; Other Eukaryotes - 550 (source: NCBI BLink).
Protein Annotations
BioGrid:12915eggNOG:COG5169eggNOG:KOG0627EMBL:AL021711
EMBL:AL161549EMBL:AY125512EMBL:BT001049EMBL:CP002687
EMBL:U68561EnsemblPlants:AT4G18880EnsemblPlants:AT4G18880.1entrez:827622
Gene3D:1.10.10.10GeneID:827622Genevisible:O49403GO:GO:0000302
GO:GO:0003700GO:GO:0005634GO:GO:0005737GO:GO:0006351
GO:GO:0006355GO:GO:0010200GO:GO:0042803GO:GO:0043565
GO:GO:0045893Gramene:AT4G18880.1hmmpanther:PTHR10015hmmpanther:PTHR10015:SF161
HOGENOM:HOG000237979InParanoid:O49403InterPro:IPR000232InterPro:IPR011991
InterPro:IPR027725iPTMnet:O49403KEGG:ath:AT4G18880KO:K09419
ncoils:CoilOMA:ARTINKPPANTHER:PTHR10015PaxDb:O49403
Pfam:O49403Pfam:PF00447PhylomeDB:O49403PIR:T05025
PRIDE:O49403PRINTS:PR00056PRO:PR:O49403ProteinModelPortal:O49403
Proteomes:UP000006548Reactome:R-ATH-3371453Reactome:R-ATH-3371511Reactome:R-ATH-3371568
Reactome:R-ATH-3371571RefSeq:NP_193623.1SMART:SM00415SMR:O49403
STRING:3702.AT4G18880.1SUPFAM:0053393SUPFAM:SSF46785TAIR:AT4G18880
tair10-symbols:AT-HSFA4Atair10-symbols:HSF A4AUniGene:At.1951UniProt:O49403
Coordinates (TAIR10) chr4:-:10347769..10349051
Molecular Weight (calculated) 46247.00 Da
IEP (calculated) 5.17
GRAVY (calculated) -0.88
Length 401 amino acids
Sequence (TAIR10)
(BLAST)
001: MDENNHGVSS SSLPPFLTKT YEMVDDSSSD SIVSWSQSNK SFIVWNPPEF SRDLLPRFFK HNNFSSFIRQ LNTYGFRKAD PEQWEFANDD FVRGQPHLMK
101: NIHRRKPVHS HSLPNLQAQL NPLTDSERVR MNNQIERLTK EKEGLLEELH KQDEEREVFE MQVKELKERL QHMEKRQKTM VSFVSQVLEK PGLALNLSPC
201: VPETNERKRR FPRIEFFPDE PMLEENKTCV VVREEGSTSP SSHTREHQVE QLESSIAIWE NLVSDSCESM LQSRSMMTLD VDESSTFPES PPLSCIQLSV
301: DSRLKSPPSP RIIDMNCEPD GSKEQNTVAA PPPPPVAGAN DGFWQQFFSE NPGSTEQREV QLERKDDKDK AGVRTEKCWW NSRNVNAITE QLGHLTSSER
401: S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)