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AT2G40140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : zinc finger (CCCH-type) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CZF1; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: salt-inducible zinc finger 1 (TAIR:AT3G55980.1); Has 1196 Blast hits to 1143 proteins in 183 species: Archae - 4; Bacteria - 47; Metazoa - 401; Fungi - 61; Plants - 441; Viruses - 2; Other Eukaryotes - 240 (source: NCBI BLink).
Protein Annotations
BioGrid:3943eggNOG:ENOG410XR0ZeggNOG:KOG1595EMBL:AF085279
EMBL:AY093016EMBL:AY128937EMBL:CP002685EnsemblPlants:AT2G40140
EnsemblPlants:AT2G40140.1EnsemblPlants:AT2G40140.2entrez:818605Gene3D:1.25.40.20
Gene3D:4.10.1000.10GeneID:818605Genevisible:Q9XEE6GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006355GO:GO:0009409
GO:GO:0010200GO:GO:0046872GO:GO:0050832Gramene:AT2G40140.1
Gramene:AT2G40140.2hmmpanther:PTHR14493hmmpanther:PTHR14493:SF51HOGENOM:HOG000240339
InParanoid:Q9XEE6InterPro:IPR000571InterPro:IPR002110InterPro:IPR020683
iPTMnet:Q9XEE6KEGG:ath:AT2G40140OMA:DMEMELRPaxDb:Q9XEE6
Pfam:PF00642Pfam:PF13637Pfam:Q9XEE6Pfscan:PS50103
Pfscan:PS50297PhylomeDB:Q9XEE6PIR:G84825PRIDE:Q9XEE6
PRO:PR:Q9XEE6PROSITE:PS50103PROSITE:PS50297ProteinModelPortal:Q9XEE6
Proteomes:UP000006548RefSeq:NP_001031517.1RefSeq:NP_181543.1SMART:SM00248
SMART:SM00356SMR:Q9XEE6STRING:3702.AT2G40140.1SUPFAM:SSF48403
TAIR:AT2G40140tair10-symbols:ATSZF2tair10-symbols:CZF1tair10-symbols:SZF2
tair10-symbols:ZFAR1UniGene:At.27663UniProt:Q9XEE6
Coordinates (TAIR10) chr2:+:16772537..16774330
Molecular Weight (calculated) 66156.90 Da
IEP (calculated) 7.06
GRAVY (calculated) -0.55
Length 597 amino acids
Sequence (TAIR10)
(BLAST)
001: MCGAKSNLCS SKTLTEVEFM RQKSEDGASA TCLLEFAACD DLSSFKREIE ENPSVEIDES GFWYCRRVGS KKMGFEERTP LMVAAMYGSM EVLNYIIATG
101: RSDVNRVCSD EKVTALHCAV SGCSVSIVEI IKILLDASAS PNCVDANGNK PVDLLAKDSR FVPNQSRKAV EVLLTGIHGS VMEEEEEELK SVVTKYPADA
201: SLPDINEGVY GTDDFRMFSF KVKPCSRAYS HDWTECPFVH PGENARRRDP RKYPYTCVPC PEFRKGSCPK GDSCEYAHGV FESWLHPAQY RTRLCKDETG
301: CARRVCFFAH RRDELRPVNA STGSAMVSPR SSNQSPEMSV MSPLTLGSSP MNSPMANGVP LSPRNGGLWQ NRVNSLTPPP LQLNGSRLKS TLSARDMDME
401: MELRFRGLDN RRLGDLKPSN LEETFGSYDS ASVMQLQSPS RHSQMNHYPS SPVRQPPPHG FESSAAMAAA VMNARSSAFA KRSLSFKPAP VASNVSDWGS
501: PNGKLEWGMQ RDELNKLRRS ASFGIHGNNN NSVSRPARDY SDEPDVSWVN SLVKENAPER VNERVGNTVN GAASRDKFKL PSWAEQMYID HEQQIVA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)