suba logo
AT1G72570.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Integrase-type DNA-binding superfamily protein; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AINTEGUMENTA-like 5 (TAIR:AT5G57390.1); Has 7692 Blast hits to 5276 proteins in 259 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 0; Plants - 7602; Viruses - 4; Other Eukaryotes - 74 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410II4VeggNOG:ENOG410YEPXEMBL:AC010926EMBL:AY603417
EMBL:CP002684EMBL:DQ446422EMBL:DQ652930EnsemblPlants:AT1G72570
EnsemblPlants:AT1G72570.1entrez:843589Gene3D:3.30.730.10GeneID:843589
Genevisible:Q1PFE1GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0007275GO:GO:0009873Gramene:AT1G72570.1
hmmpanther:PTHR32467hmmpanther:PTHR32467:SF5HOGENOM:HOG000239258InParanoid:Q1PFE1
InterPro:IPR001471InterPro:IPR016177InterPro:IPR031112iPTMnet:Q1PFE1
KEGG:ath:AT1G72570KO:K09285ncoils:CoilOMA:GPTTHLN
PANTHER:PTHR32467PaxDb:Q1PFE1Pfam:PF00847Pfam:Q1PFE1
Pfscan:PS51032PhylomeDB:Q1PFE1PIR:B96750PRIDE:Q1PFE1
PRINTS:PR00367PRO:PR:Q1PFE1PROSITE:PS51032ProteinModelPortal:Q1PFE1
Proteomes:UP000006548RefSeq:NP_177401.2SMART:SM00380SMR:Q1PFE1
STRING:3702.AT1G72570.1SUPFAM:SSF54171TAIR:AT1G72570UniGene:At.50661
UniProt:Q1PFE1
Coordinates (TAIR10) chr1:+:27331381..27333698
Molecular Weight (calculated) 47135.50 Da
IEP (calculated) 7.08
GRAVY (calculated) -0.83
Length 415 amino acids
Sequence (TAIR10)
(BLAST)
001: MKKWLGFSLT PPLRICNSEE EELRHDGSDV WRYDINFDHH HHDEDVPKVE DLLSNSHQTE YPINHNQTNV NCTTVVNRLN PPGYLLHDQT VVTPHYPNLD
101: PNLSNDYGGF ERVGSVSVFK SWLEQGTPAF PLSSHYVTEE AGTSNNISHF SNEETGYNTN GSMLSLALSH GACSDLINES NVSARVEEPV KVDEKRKRLV
201: VKPQVKESVP RKSVDSYGQR TSQYRGVTRH RWTGRYEAHL WDNSCKKEGQ TRRGRQVYLG GYDEEEKAAR AYDLAALKYW GPTTHLNFPL SNYEKEIEEL
301: NNMNRQEFVA MLRRNSSGFS RGASVYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGLNAVT NFDINRYDVK RICSSSTIVD
401: SDQAKHSPTS SGAGH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)