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AT1G62975.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G12540.1); Has 533 Blast hits to 533 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 85; Fungi - 0; Plants - 445; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JWTBeggNOG:ENOG41104MQEMBL:AB493516EnsemblPlants:AT1G62975
EnsemblPlants:AT1G62975.1entrez:842600ExpressionAtlas:C0SV13Gene3D:4.10.280.10
GeneID:842600GO:GO:0003677Gramene:AT1G62975.1hmmpanther:PTHR13935
hmmpanther:PTHR13935:SF54InterPro:IPR011598InterPro:IPR015660iPTMnet:Q9LQ08
KEGG:ath:AT1G62975ncoils:CoilOMA:CSCVGDKPANTHER:PTHR13935
PaxDb:C0SV13Pfam:PF00010Pfam:Q9LQ08Pfscan:PS50888
PhylomeDB:C0SV13PRIDE:C0SV13PROSITE:PS50888ProteinModelPortal:C0SV13
RefSeq:NP_683462.1SMART:SM00353SMR:C0SV13SUPFAM:SSF47459
TAIR:AT1G62975UniGene:At.70486UniProt:C0SV13UniProt:Q9LQ08
Coordinates (TAIR10) chr1:+:23328901..23330522
Molecular Weight (calculated) 29216.20 Da
IEP (calculated) 8.85
GRAVY (calculated) -0.33
Length 259 amino acids
Sequence (TAIR10)
(BLAST)
001: MDCVPSLFMP DSTYEDGLLF SDSFLLSPFI SYQNNDVFHS ITNKIGGSNK KRSLCDITYG ANEANKNDDD RESKKMKHRD IERQRRQEVS SLFKRLRTLL
101: PFQYIQGKRS TSDHIVQAVN YIKDLQIKIK ELNEKRNRVK KVISATTTTH SAIEECTSSL SSSAASTLSS SCSCVGDKHI TVVVTPCLVG VEIIISCCLG
201: RNKSCLSSVL QMLAQEQRFS VVSCLSARRQ QRFMHTIVSQ VEDGKQINIL ELKDKIMTM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)