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AT1G72140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport, response to nematode; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G22540.1); Has 7231 Blast hits to 7080 proteins in 1330 species: Archae - 0; Bacteria - 3541; Metazoa - 585; Fungi - 456; Plants - 2171; Viruses - 0; Other Eukaryotes - 478 (source: NCBI BLink).
Protein Annotations
eggNOG:COG3104eggNOG:KOG1237EMBL:AC067754EMBL:AK175547
EMBL:AK230313EMBL:BT015165EMBL:CP002684EnsemblPlants:AT1G72140
EnsemblPlants:AT1G72140.1entrez:843545GeneID:843545Genevisible:Q9C7U1
GO:GO:0005215GO:GO:0005774GO:GO:0009624GO:GO:0016021
Gramene:AT1G72140.1hmmpanther:PTHR11654hmmpanther:PTHR11654:SF94HOGENOM:HOG000237400
InParanoid:Q9C7U1InterPro:IPR000109InterPro:IPR020846KEGG:ath:AT1G72140
OMA:IPCLSMMPANTHER:PTHR11654PaxDb:Q9C7U1Pfam:PF00854
Pfam:Q9C7U1PhylomeDB:Q9C7U1PIR:G96744PRIDE:Q9C7U1
PRO:PR:Q9C7U1ProteinModelPortal:Q9C7U1Proteomes:UP000006548RefSeq:NP_177359.1
SMR:Q9C7U1STRING:3702.AT1G72140.1SUPFAM:SSF103473TAIR:AT1G72140
TMHMM:TMhelixUniGene:At.22837UniGene:At.66817UniProt:Q9C7U1
Coordinates (TAIR10) chr1:+:27141877..27144346
Molecular Weight (calculated) 61389.50 Da
IEP (calculated) 7.97
GRAVY (calculated) 0.39
Length 555 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTSIGDNET GAIVSNENVE FSVDFRGNPS IRSSSGAWKS SGFTMCAEVA EKFAYFGIAS NLITYFTEAL GESTAVAASN VNLWLGTAAF LPLIWGSIAD
101: SFLGRFRTIL LTSSFYIMGL GLLTFSATIP SLCNDQETRE SCVSQVKVII FFCALYLIAL GEGGFKVCLR AFGADQFDEQ DPNESKAKSS YFNWLYFAIS
201: IGILTTRLVT NYVQENLSWA LGYAIPCLSM MLALFLFLLG IKTYRFSTGG EGRQGKKHDN PFVRIGRVFV AAARNRRQTP SDTCLLLPNE STKKFRFLDR
301: AVISCDSYEV EEAKAVLSLI PIWLCSLVFG IVFAQSPTFF TKQGSTMDRS ISSTLQVPAA TLQCFISLAI LVFIPIYDRL FVPIARSITR KPAGITTLQR
401: ISTGIFLSII SMVIAALVEM KRLKTARDHG LVDSPKATVP MSVCWLIPQY ILFGVSDVFT MVGLQEFFYG EVPPQLRSMG LALYLSIIGI GNFLSSFMVS
501: VIEEATSQSG QVSWFSNNLN QAHLDYFYWL LACLSSLAFI FTVYFAKSYL YNSPK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)