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AT1G14240.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.597
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GDA1/CD39 nucleoside phosphatase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GDA1/CD39 nucleoside phosphatase family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407); BEST Arabidopsis thaliana protein match is: GDA1/CD39 nucleoside phosphatase family protein (TAIR:AT1G14250.1); Has 1471 Blast hits to 1463 proteins in 237 species: Archae - 0; Bacteria - 39; Metazoa - 609; Fungi - 317; Plants - 332; Viruses - 0; Other Eukaryotes - 174 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G14240-MONOMERBioCyc:ARA:GQT-911-MONOMERBioCyc:ARA:GQT-912-MONOMEREC:3.6.1.5
eggNOG:COG5371eggNOG:KOG1386EMBL:AC007576EMBL:AK227399
EMBL:AK317332EMBL:BT006000EMBL:CP002684EMBL:JF830008
EnsemblPlants:AT1G14240EnsemblPlants:AT1G14240.1EnsemblPlants:AT1G14240.2EnsemblPlants:AT1G14240.4
entrez:837985ExpressionAtlas:Q9XI62GeneID:837985Genevisible:Q9XI62
GO:GO:0005524GO:GO:0016021GO:GO:0016787hmmpanther:PTHR11782
hmmpanther:PTHR11782:SF42HOGENOM:HOG000077482InParanoid:Q9XI62InterPro:IPR000407
OMA:YHLLIHGPANTHER:PTHR11782PaxDb:Q9XI62Pfam:PF01150
Pfam:Q9XI62PhylomeDB:Q9XI62PIR:D86276PRIDE:Q9XI62
PRO:PR:Q9XI62PROSITE:PS01238ProteinModelPortal:Q9XI62Proteomes:UP000006548
RefSeq:NP_001117284.1RefSeq:NP_172876.1RefSeq:NP_973822.2scanprosite:PS01238
SMR:Q9XI62STRING:3702.AT1G14240.1TAIR:AT1G14240TMHMM:TMhelix
UniGene:At.41982UniProt:Q9XI62
Coordinates (TAIR10) chr1:+:4865159..4867777
Molecular Weight (calculated) 53428.50 Da
IEP (calculated) 6.71
GRAVY (calculated) -0.14
Length 483 amino acids
Sequence (TAIR10)
(BLAST)
001: MTPETDALKV QILPKHQSLP YTVTKAKSKS LILLVVVSVT ITLGLLLYVF NSNSVISSGS LLSRRCKLRY SVLIDAGSSG TRVHVFGYWF ESGKPVFDFG
101: EKHYANLKLT PGLSSYADNP EGASVSVTKL VEFAKQRIPK RMFRRSDIRL MATAGMRLLE VPVQEQILEV TRRVLRSSGF MFRDEWANVI SGSDEGIYSW
201: ITANYALGSL GTDPLETTGI VELGGASAQV TFVSSEHVPP EYSRTIAYGN ISYTIYSHSF LDYGKDAALK KLLEKLQNSA NSTVDGVVED PCTPKGYIYD
301: TNSKNYSSGF LADESKLKGS LQAAGNFSKC RSATFALLKE GKENCLYEHC SIGSTFTPDL QGSFLATASF YYTAKFFELE EKGWLSELIP AGKRYCGEEW
401: SKLILEYPTT DEEYLRGYCF SAAYTISMLH DSLGIALDDE SITYASKAGE KHIPLDWALG AFILDVVTPN SDYNGKSRKY LGF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)