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AT2G16005.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Predictors External Curations
AdaBoost: plasma membraneBaCelLo: endoplasmic reticulumBaCelLo: extracellularBaCelLo: golgi
iPSORT: endoplasmic reticulumiPSORT: extracellulariPSORT: golgiMultiLoc: plasma membrane
Plant-mPloc: extracellularPlant-mPloc: golgiPlant-mPloc: nucleusPlant-mPloc: plasma membrane
Plant-mPloc: plastidPredotar: endoplasmic reticulumPredotar: extracellularPredotar: golgi
PredSL: endoplasmic reticulumPredSL: extracellularPredSL: golgiPProwler: endoplasmic reticulum
PProwler: extracellularPProwler: golgiSLPFA: endoplasmic reticulumSLPFA: extracellular
SLPFA: golgiSLP-Local: endoplasmic reticulumSLP-Local: extracellularSLP-Local: golgi
SubLoc: extracellularTargetP: endoplasmic reticulumTargetP: extracellularTargetP: golgi
WoLF PSORT: extracellularYLoc: extracellular
 no data
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : MD-2-related lipid recognition domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)		 MD-2-related lipid recognition domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: MD-2-related lipid-recognition (InterPro:IPR003172); BEST Arabidopsis thaliana protein match is: MD-2-related lipid recognition domain-containing protein (TAIR:AT3G44100.1); Has 153 Blast hits to 153 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 28; Plants - 119; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111SSCeggNOG:KOG4680EMBL:AC007134EMBL:AF361840
EMBL:AY066048EMBL:CP002685EnsemblPlants:AT2G16005EnsemblPlants:AT2G16005.1
entrez:816096GeneID:816096Gramene:AT2G16005.1hmmpanther:PTHR11306
InterPro:IPR003172InterPro:IPR014756KEGG:ath:AT2G16005OMA:CDITACP
Pfam:PF02221PhylomeDB:Q9AST8Proteomes:UP000006548RefSeq:NP_565385.1
SMART:SM00737STRING:3702.AT2G16005.1SUPFAM:SSF81296TAIR:AT2G16005
UniGene:At.28447UniProt:Q9AST8
Coordinates (TAIR10) chr2:-:6959347..6960135
Molecular Weight (calculated) 17229.40 Da
IEP (calculated) 8.21
GRAVY (calculated) 0.38
Length 160 amino acids
Sequence (TAIR10)
(BLAST) 		001: MAISHTQLLL LLLVSLFFSP ALCGPKFQTC DTGKEYPLKV SSVEISPDPV KRSGNGEITI TGVTNKEISD GVTVNLKLAV GMFPVSTKSY SLCDITACPV
101: APGPIVLTLP NIFTPREKRT AIGYTIIISI TDKPLKESMM CILFVVKLTG HASMINQVTE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)