suba logo
AT1G69560.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : myb domain protein 105
Curator
Summary (TAIR10)
Encodes LOF2 (LATERAL ORGAN FUSION2), a MYB-domain transcription factor expressed in organ boundaries. Functions in boundary specification, meristem initiation and maintenance, and organ patterning. Also see LOF1 (At1g26780).
Computational
Description (TAIR10)
myb domain protein 105 (MYB105); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 117 (TAIR:AT1G26780.2); Has 8910 Blast hits to 7943 proteins in 558 species: Archae - 0; Bacteria - 0; Metazoa - 941; Fungi - 606; Plants - 5396; Viruses - 6; Other Eukaryotes - 1961 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AC021046EMBL:AC073178
EMBL:AF249308EMBL:CP002684EnsemblPlants:AT1G69560EnsemblPlants:AT1G69560.1
entrez:843292Gene3D:1.10.10.60GeneID:843292GO:GO:0003677
GO:GO:0003700GO:GO:0006355GO:GO:0010199Gramene:AT1G69560.1
hmmpanther:PTHR10641hmmpanther:PTHR10641:SF473HOGENOM:HOG000237764InterPro:IPR001005
InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT1G69560KO:K09422
OMA:YTSHREEPfam:PF00249Pfscan:PS51294PhylomeDB:Q9SEZ4
PIR:C96717PROSITE:PS51294Proteomes:UP000006548RefSeq:NP_177115.1
SMART:SM00717SMR:Q9SEZ4STRING:3702.AT1G69560.1SUPFAM:SSF46689
TAIR:AT1G69560tair10-symbols:ATMYB105tair10-symbols:LOF2tair10-symbols:MYB105
UniGene:At.14733UniProt:Q9SEZ4
Coordinates (TAIR10) chr1:+:26157755..26158906
Molecular Weight (calculated) 38442.20 Da
IEP (calculated) 7.31
GRAVY (calculated) -0.77
Length 330 amino acids
Sequence (TAIR10)
(BLAST)
001: MEMVHADVAS LSITPCFPSS LSSSSHHHYN QQQHCIMSED QHHSMDQTTS SDYFSLNIDN AQHLRSYYTS HREEDMNPNL SDYSNCNKKD TTVYRSCGHS
101: SKASVSRGHW RPAEDTKLKE LVAVYGPQNW NLIAEKLQGR SGKSCRLRWF NQLDPRINRR AFTEEEEERL MQAHRLYGNK WAMIARLFPG RTDNSVKNHW
201: HVIMARKFRE QSSSYRRRKT MVSLKPLINP NPHIFNDFDP TRLALTHLAS SDHKQLMLPV PCFPGYDHEN ESPLMVDMFE TQMMVGDYIA WTQEATTFDF
301: LNQTGKSEIF ERINEEKKPP FFDFLGLGTV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)