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AT1G32770.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : NAC domain containing protein 12
Curator
Summary (TAIR10)
Encodes SND1, a NAC Domain transcription factor involved in secondary wall biosynthesis in fibers. Expressed specifically in interfascicular fibers and xylary fibers in stems. Expressed in the procambium of stem inflorescences and root. May act as a negative regulator of secondary wall thickening in xylary fibers. Acts redundantly with NST1 to control development of secondary walls in siliques.
Computational
Description (TAIR10)
NAC domain containing protein 12 (NAC012); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (TAIR:AT2G46770.1); Has 2894 Blast hits to 2888 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2894; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IQY7eggNOG:ENOG41113G2EMBL:AC017118EMBL:CP002684
EMBL:EF101892EnsemblPlants:AT1G32770EnsemblPlants:AT1G32770.1entrez:840171
GeneID:840171Genevisible:Q9LPI7GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0009834GO:GO:0010047GO:GO:0043565
GO:GO:0045893Gramene:AT1G32770.1hmmpanther:PTHR31989hmmpanther:PTHR31989:SF39
HOGENOM:HOG000237406InParanoid:Q9LPI7InterPro:IPR003441KEGG:ath:AT1G32770
OMA:LWSSFTEPaxDb:Q9LPI7Pfam:PF02365Pfam:Q9LPI7
Pfscan:PS51005PhylomeDB:Q9LPI7PIR:E86452PRIDE:Q9LPI7
PRO:PR:Q9LPI7PROSITE:PS51005ProteinModelPortal:Q9LPI7Proteomes:UP000006548
RefSeq:NP_174554.1SMR:Q9LPI7STRING:3702.AT1G32770.1SUPFAM:SSF101941
TAIR:AT1G32770tair10-symbols:ANAC012tair10-symbols:NAC012tair10-symbols:NST3
tair10-symbols:SND1UniGene:At.51889UniProt:Q9LPI7
Coordinates (TAIR10) chr1:-:11865343..11866950
Molecular Weight (calculated) 41522.50 Da
IEP (calculated) 5.58
GRAVY (calculated) -0.81
Length 358 amino acids
Sequence (TAIR10)
(BLAST)
001: MADNKVNLSI NGQSKVPPGF RFHPTEEELL HYYLRKKVNS QKIDLDVIRE VDLNKLEPWD IQEECRIGST PQNDWYFFSH KDKKYPTGTR TNRATVAGFW
101: KATGRDKIIC SCVRRIGLRK TLVFYKGRAP HGQKSDWIMH EYRLDDTPMS NGYADVVTED PMSYNEEGWV VCRVFRKKNY QKIDDCPKIT LSSLPDDTEE
201: EKGPTFHNTQ NVTGLDHVLL YMDRTGSNIC MPESQTTTQH QDDVLFMQLP SLETPKSESP VDQSFLTPSK LDFSPVQEKI TERPVCSNWA SLDRLVAWQL
301: NNGHHNPCHR KSFDEEEENG DTMMQRWDLH WNNDDNVDLW SSFTESSSSL DPLLHLSV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)