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AT3G49530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : NAC domain containing protein 62
Curator
Summary (TAIR10)
Transcription factor that serves as a molecular link between cold signals and pathogen resistance responses. Undergoes proteolytic processing triggered by cold-induced changes in membrane fluidity.
Computational
Description (TAIR10)
NAC domain containing protein 62 (NAC062); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: TCV-interacting protein (TAIR:AT5G24590.2); Has 2933 Blast hits to 2926 proteins in 76 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2931; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGNUeggNOG:ENOG410ZJITEMBL:AL132964EMBL:AY059734
EMBL:BT000978EMBL:CP002686EnsemblPlants:AT3G49530EnsemblPlants:AT3G49530.1
entrez:824115GeneID:824115Genevisible:Q9SCK6GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0005886GO:GO:0006351
GO:GO:0009814GO:GO:0010200GO:GO:0016021GO:GO:0070417
Gramene:AT3G49530.1hmmpanther:PTHR31989hmmpanther:PTHR31989:SF5HOGENOM:HOG000074733
IntAct:Q9SCK6InterPro:IPR003441iPTMnet:Q9SCK6KEGG:ath:AT3G49530
OMA:FLMSVCSPaxDb:Q9SCK6Pfam:PF02365Pfam:Q9SCK6
Pfscan:PS51005PhylomeDB:Q9SCK6PIR:T46230PRIDE:Q9SCK6
PRO:PR:Q9SCK6PROSITE:PS51005ProteinModelPortal:Q9SCK6Proteomes:UP000006548
RefSeq:NP_190522.1SMR:Q9SCK6STRING:3702.AT3G49530.1SUPFAM:SSF101941
TAIR:AT3G49530tair10-symbols:ANAC062tair10-symbols:NAC062tair10-symbols:NTL6
UniGene:At.1032UniGene:At.67285UniProt:Q9SCK6
Coordinates (TAIR10) chr3:-:18362639..18364717
Molecular Weight (calculated) 52496.60 Da
IEP (calculated) 5.94
GRAVY (calculated) -0.52
Length 469 amino acids
Sequence (TAIR10)
(BLAST)
001: MNQNLHVLSM DSLPVGLRFR PTDEELIRYY LRRKINGHDD DVKAIREIDI CKWEPWDLPD FSVIKTKDSE WLYFCPLDRK YPSGSRQNRA TVAGYWKATG
101: KDRKIKSGKT NIIGVKRTLV FHAGRAPRGT RTNWIIHEYR ATEDDLSGTN PGQSPFVICK LFKKEELVLG EEDSKSDEVE EPAVSSPTVE VTKSEVSEVI
201: KTEDVKRHDI AESSLVISGD SHSDACDEAT TAELVDFKWY PELESLDFTL FSPLHSQVQS ELGSSYNTFQ PGSSNFSGNN NNSFQIQTQY GTNEVDTYIS
301: DFLDSILKSP DEDPEKHKYV LQSGFDVVAP DQIAQVCQQG SAVDMSNDVS VTGIQIKSRQ AQPSGYTNDY IAQGNGPRRL RLQSNFNGIN TKNPELQAIK
401: REAEDTVGES IKKRCGKLMR SKNVTGFVFK KITSVKCSYG GLFRAAVVAV VFLMSVCSLT VDFRASAVS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)