AT4G36550.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G67530.2); Has 2348 Blast hits to 2266 proteins in 141 species: Archae - 0; Bacteria - 20; Metazoa - 120; Fungi - 34; Plants - 2017; Viruses - 3; Other Eukaryotes - 154 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:17245400..17247926 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 79923.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.32 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 718 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRIDYTERMP QSYKMHSSMC LELKRLVDRI MRIFPDIEDA RPGCSSGIQT LCLLHNALDK TKQLLQYCSE SSKLYMAVTG DAILARGSRA KKSLEQCLND 101: IRSIVPTILE IKISQIVQDL RSTQLTLEFS EEEAGKAIRE LMQKSTSSSA SPDEIKDFHY AALKLQLSTP EAIVTERRSL KIICEDHKQN SFTHHQSIDD 201: SLHANAAEAE ASEEHNGTLP EKFKCTLSRT VMYDPVIISS GNTFERMQIQ KWFDEGNDSC PISKRKLDDF TLKPNVELKS QISEWCAKNG LDVQDPARKH 301: VKASNSIDFS VSIASFGSSL YNIPDHSGIS ITDFNSSYSI DSSSYSKMSK GGYFTPMQRI DSASGAGDTD SSHSEIEIDP LCGLTNLPWD AQIKVVEDVR 401: SRFEHSTRAF RSMSPSKFLE PLITYLKNAL ERNGTAGEII KGGLDLLLAF LSGNRRAIES LEEEVFKMFS VFLESEVVAE EALNILEVLS NHPHGPSKIT 501: SSGSLSSLLK IVESQAEHLQ EQAMITLKNL SSSMEICLEM VSLDFIQKLT SFLQQKVFCK HSIIILKNLC STEKGRGCIT ETPDCLASIA ELLESNVPEE 601: QENAISILLQ LCVQKIEYCC LVVREATDIY SSLILISNNG TEEVKVSASE LLRALVEVDS DKEEEEEVSS RPEGRTTASP TSQVVTPVTH PEPVKITPSP 701: KKSGLFGFNF SSLKKKKK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)