suba logo
AT5G66675.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF677)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF677); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF677) (TAIR:AT2G18630.1); Has 241 Blast hits to 232 proteins in 16 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 237; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JXDXeggNOG:ENOG4110423EMBL:AB018119EMBL:AK119145
EMBL:BT005355EMBL:CP002688EnsemblPlants:AT5G66675EnsemblPlants:AT5G66675.1
entrez:836800GeneID:836800GO:GO:0016021Gramene:AT5G66675.1
hmmpanther:PTHR31113hmmpanther:PTHR31113:SF3HOGENOM:HOG000029756InParanoid:Q8GW16
InterPro:IPR007749KEGG:ath:AT5G66675ncoils:CoilOMA:KRARIGQ
PaxDb:Q8GW16Pfam:PF05055Pfam:Q8GW16PhylomeDB:Q8GW16
PRIDE:Q8GW16PRO:PR:Q8GW16Proteomes:UP000006548RefSeq:NP_850929.1
STRING:3702.AT5G66675.1TAIR:AT5G66675TMHMM:TMhelixUniGene:At.25386
UniProt:Q8GW16
Coordinates (TAIR10) chr5:-:26615252..26616571
Molecular Weight (calculated) 46374.00 Da
IEP (calculated) 7.78
GRAVY (calculated) -0.18
Length 412 amino acids
Sequence (TAIR10)
(BLAST)
001: MFLGMFSKTM EDKSNSSRNR TNNTPLPQQI RTDMGSLYSA DLTAYNSACR EDPDLQSFDS SLHQRTNRVI NSLASGAQTR SLSFDALIEV SGCLLEMNQE
101: VVRFIIESKE DVWDNKDLTC LVNAYFDSSI KTLDFCNAVD NCVKRARIGQ MLLQFALKQF EMESSGSNKS VEPGTNKYAK TLEELNKFKA SGDPFDGDFF
201: MLLESVYEQQ VMLLEILHKQ KRKLDKKLKN IKYWKKISNV VFVTAFVSVL IFSVVAAAVA APPVVTALAA ALAVPIGSIG KWCNHLWKKY ETAVKGQKDI
301: VLSMRIGAYV TMKDMDNIRV HVDKLKIEME SMMQKVDFAL KEKEEEVAVR LSMHEISKKF DVFTERIEEV GDNATKCSKN ITLARTIVLR HILSFPSSSD
401: SGQGNLIEAI TL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)