AT5G53570.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.999 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Ypt/Rab-GAP domain of gyp1p superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT3G49350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:21760924..21763082 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61919.60 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.39 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||
| Length | 550 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKALRRSYTS TSSGNSSSSS SLPSSSSSSL PSSSSSSPPS SNSNSYSNSN SSSSSSSWIH LRSVLFVANL SSPSSVTSSD RRRKSPWSRR KRKWALTPHQ 101: WRSLFTPEGK LRDGGVGFLK KVRSRGVDPS IRAEVWLFLL GVYDLNSTSE EREAVKTQKR KEYEKLQRRC QMLLKCGNGS TDNLEELPSD EANSQCVRFV 201: DDYKITGPMT SQDVVSALNT DSSDTDSCED NEDVLLLSSF AHSDEKKPEE DNSNNNSEEN SSLLVAAASE VQVEVAVHED FSTWQRIIRL DALRADSEWA 301: NYSPYSTAIT ESKARRLAES VGLKDYDHLE SCRLYHAARL VAILEAYAMY DPEIGYCQGM SDLLSPILAV ISEDHEAFWC FVGFMKKARH NFRLDEAGIQ 401: RQLSIVSKII KNKDSQLYKH LENLQAEDCS FVYRMVLVMF RRELSFEQTL CLWEVMWADQ AAIRAGVGKS PWSRIRQQAP PTDDLLLYAI AALVLRRKLI 501: IQKYSSMDEI VEECNSMAGQ LNVWKLLDDA HHLVVTLHDK IETLSQSQSI |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)