AT3G49350.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.961 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ypt/Rab-GAP domain of gyp1p superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT5G24390.1); Has 4289 Blast hits to 3657 proteins in 225 species: Archae - 0; Bacteria - 0; Metazoa - 2316; Fungi - 775; Plants - 693; Viruses - 0; Other Eukaryotes - 505 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:18297663..18299846 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61793.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.52 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.55 | ||||||||||||||||||||||||||||||||
| Length | 539 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKALRRIQTT SSSSNPSSPL SSPPSSSSSS SWIQIRSALF VVASSSPASC SDRPRLKSPW SRRKRKRPLR PQQWKRFFTP DGRLRNGGVD LLKKVRSRGI 101: EPSIRLEVWP FLLGLYGFNS SKEERVTIRN RRRKEYERLR RQCKRLQKHN NGTRKLYNGS ETIQDEYDWP RVQDTDSSCS DEVVSARESL SSDEDITEDI 201: GYMSEVSCTV ERDDGSSSRR ITNATISTLN SESSDSDSSD ESEVVQVFQS SATPDVNSTY PASSSIPRTE EDFVTWQRII RLDAVRADSE WTSYSPSQAV 301: ISEDRACRAA EAVGLKDYNH LEPYKIFQAA RLVAVLEAYA LYDPDIGYCQ GMSDLLSPIL SVIPDDHEVF WCFVGFMKKA RHNFRLDEVG IRRQLNIVSK 401: IIKSKDSQLY RHLEKLQAED CFFVYRMVVV MFRRELTLDQ TLCLWEVMWA DQAAIRAGMG KSAWSRIRQR APPTDDLVLY AIAASVLQRR KRIIERYNSM 501: DEILRECQSM AGQLDVWKLL DDAHDLVVTL HTKIEHSFS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)