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AT1G22280.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:32219438 (2020): cytosol
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24030099 (2013): plasma membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:22182420 (2012): endoplasmic reticulum
  • PMID:20843791 (2010): plasma membrane
  • PMID:18433157 (2008): nucleus
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16618929 (2006): plasma membrane
  • PMID:15308754 (2004): plasma membrane
  • PMID:14506206 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : phytochrome-associated protein phosphatase type 2C
Curator
Summary (TAIR10)
Encodes a phytochrome-associated protein, PAPP2C (phytochrome-associated protein phosphatase type 2C). PAPP2C interacts in the nucleus with phyA (phytochrome A) and phyB. Functions as a regulator of phytochrome-interacting factor PIF3 by dephosphorylating phytochromes in the nucleus.
Computational
Description (TAIR10)
phytochrome-associated protein phosphatase type 2C (PAPP2C); FUNCTIONS IN: protein serine/threonine phosphatase activity, phosphoprotein phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation, red light signaling pathway; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT1G34750.1); Has 8206 Blast hits to 8190 proteins in 1131 species: Archae - 16; Bacteria - 1989; Metazoa - 1496; Fungi - 741; Plants - 2625; Viruses - 11; Other Eukaryotes - 1328 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G22280-MONOMERBioCyc:ARA:GQT-527-MONOMERBioGrid:24074EC:3.1.3.16
eggNOG:COG0631eggNOG:KOG0698EMBL:AC068562EMBL:AY080735
EMBL:AY084874EMBL:AY133737EMBL:BX813947EMBL:CP002684
EnsemblPlants:AT1G22280EnsemblPlants:AT1G22280.1entrez:838835ExpressionAtlas:Q9LME4
Gene3D:3.60.40.10GeneID:838835Genevisible:Q9LME4GO:GO:0004722
GO:GO:0005634GO:GO:0046872hmmpanther:PTHR13832hmmpanther:PTHR13832:SF314
HOGENOM:HOG000233896InParanoid:Q9LME4IntAct:Q9LME4InterPro:IPR001932
InterPro:IPR015655iPTMnet:Q9LME4PANTHER:PTHR13832PaxDb:Q9LME4
Pfam:PF00481Pfam:Q9LME4Pfscan:PS51746PhylomeDB:Q9LME4
PIR:F86355PRIDE:Q9LME4PRO:PR:Q9LME4PROSITE:PS51746
ProteinModelPortal:Q9LME4Proteomes:UP000006548RefSeq:NP_564165.1RefSeq:NP_973883.1
SMART:SM00331SMART:SM00332SMR:Q9LME4STRING:3702.AT1G22280.3
SUPFAM:SSF81606SwissPalm:Q9LME4TAIR:AT1G22280tair10-symbols:PAPP2C
UniGene:At.41611UniProt:Q9LME4
Coordinates (TAIR10) chr1:+:7874236..7875496
Molecular Weight (calculated) 30723.30 Da
IEP (calculated) 7.20
GRAVY (calculated) -0.41
Length 281 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKFCCFTSA SEVVGGQSSS RSGKGRSDEG MIKYGFSLVK GKANHPMEDY HVANFINIQD HELGLFAIYD GHMGDSVPAY LQKRLFSNIL KEGEFWVDPR
101: RSIAKAYEKT DQAILSNSSD LGRGGSTAVT AILINGRKLW IANVGDSRAV LSHGGAITQM STDHEPRTER SSIEDRGGFV SNLPGDVPRV NGQLAVSRAF
201: GDKGLKTHLS SEPDIKEATV DSQTDVLLLA SDGIWKVMTN EEAMEIARRV KDPQKAAKEL TAEALRRESK DDISCVVVRF R
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)