AT1G03370.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : C2 calcium/lipid-binding and GRAM domain containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
C2 calcium/lipid-binding and GRAM domain containing protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), GRAM (InterPro:IPR004182), C2 region (InterPro:IPR020477), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 calcium/lipid-binding and GRAM domain containing protein (TAIR:AT5G50170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:830968..834996 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 114211.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.34 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1020 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MKLQVRVVEA RNLPAMDLNG FSDPYVRLQL GKQRSRTKVV KKNLNPKWTE DFSFGVDDLN DELVVSVLDE DKYFNDDFVG QVRVSVSLVF DAENQSLGTV 0101: WYPLNPKKKG SKKDCGEILL KICFSQKNSV LDLTSSGDQT SASRSPDLRL ESPIDPSTCA SPSRSDDASS IPQTTFAGRF TQIFQKNAIT ATPTQSSSRS 0201: IDASDLSEIS KPVFSLELSE DESSSTSFEE LLKAMESKDQ GSEPPSNLSG GVVVDQLFMI SPSDLNIVLF ASDSSFYASL TELQGTTEVQ IGPWKAENDG 0301: ESVKRVVSYL KAATKLIKAV KGTEEQTYLK ADGEVYAVLA SVATPDVPFG GTFKVEVLYC ISPGPELPSG EQCSRLVVSW RLNFLQSTMM RGMIENGARQ 0401: GLKDNFEQYA NLLAQSVKPV DSKDIGLNKE QALSSLQAEP QSDWKLAVQY FANFTVLSTF LIGIYVFVHI VFAIPSAIQG LEFNGLDLPD SIGEFVVSGV 0501: LVLQCERVLQ LISRFMQARK QKGSDHGIKA HGDGWLLTVA LIEGVDLAAV DPSGHCDPYI VFTSNGKTRT SSIKFQKSNP QWNEIFEFDA MADPPSVLNV 0601: EVFDFDGPFD EAVSLGHAEV NFVRSNISDL ADVWVPLQGK LAQACQSKLH LRIFLDHTGG GDVVRDYLNK MEKEVGKKIN VRSPQTNSAF QKLFGLPQEE 0701: FLINDFTCHL KRKMPLQGRL FLSARIVGFY ASIFGNKTKF FFLWEDIEEI QVLPPTLASM GSPIVVMTLR PNRGLDARIG AKTHDEEGRL KFHFHSFVSF 0801: NVAQKTIMAL WKAKSLTPEQ KVQAVEEESE QKLQSEESGL FLGVDDVRFS EVFSLTLPVP VSFFMELFGG GEVDRKAMER AGCQSYSCSP WESEKDDVYE 0901: RQTYYRDKRI SRYRGEVTST QQKSLVPEKN GWLVEEVMTL HGVPLGDYFN LHLRYQMEES TSKPKTTYVR VYFGIEWLKS TRHQKRVTKN ILVNLQDRLK 1001: MTFGFLEKEY SSRQQQQQVT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)