AT2G18090.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), SWIB/MDM2 domain (InterPro:IPR003121), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), GYF (InterPro:IPR003169), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (TAIR:AT3G51120.1); Has 1270 Blast hits to 1121 proteins in 190 species: Archae - 0; Bacteria - 166; Metazoa - 513; Fungi - 60; Plants - 433; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:7864501..7867317 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 91133.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.38 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.55 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 824 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPEIDLMRVD HCVSDVKLDD SSSSPPGFFD GGGVPLDSDV KLDEEDSDSL KKRGRRGRPP RILAKASSPP ISRKRREDED VCFVCFDGGS LVLCDRRGCP 101: KAYHPACVKR TEAFFRSRSK WNCGWHICTT CQKDSFYMCY TCPYSVCKRC VRSSEYVVVR ENKGFCGICM KTIMLIENAA EANKEKVQVD FDDQGSWEYL 201: FKIYWVSLKE KLGLSLDDLT KAKNPWKSSS STAAKRRTTS RVHEKDDGNS PGVMKIRRAK VRKMDAVSVS NLGPSLDSNC SLGDRLPQLT SAATWATNEL 301: LDFVGYMKNG DISVLSKYDV QTLVLEYVRR NNLQNSPQNS EIMCDSKLMR LFGKERVDNL EMLKLLDSHF IDQVRSPVTD NSAGGVTETM SYQVNAGRSC 401: DRLNTSEQHQ EGESQQLNGH SIQVRPSSSD SRNHAVVKPD TSATLSNKPI DGLDTNMVWL YGDPDGKIHG PFSLYNLRQW NSSGHFPPEL RIWRLGEQQH 501: SSILLTDALN GQFHKTGLLQ NHSIPKQEVT ATIANDQNRS VAVPKIESRI LDFSPNSVCT DQSVISSSNS VITRSSDVSN KSGNNCSHAV PLDFSLSNER 601: DTVGFISLWD KRKVESSLLV QSPISCSLSL ATLPRNSNCS LPPHERWSAG QTDGNSAATT ACNQNGSLSG SAEKQVTATV QSCGQNWNAA TPSSASNVWD 701: SNSGLTSFPD NQEIDFLDLF SPTFKFNFAS TTTDWQPIVA GPDECDESVS DLLAEVEAME SQKRLPSPTS TFRGPEELLI RHSINDSFSP AEGHSPALDV 801: SKGDSMSSTN DLQMHSRSNS TVHF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)