AT5G22450.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:7437145..7442856 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 126092.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.32 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.73 | ||||||||||||||||||||||||
| Length | 1154 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MLGSGNNLSR GTIGLSSDTP NLSQVLTLEP IRLGNQNYTR SGELRRVLGV PSRASSEDNS FGMSHPRPSP PVATEELKHF KESVLDTSRE AGDLVKKLSE 0101: NIFKLDKYAE TINSKKRRRN DIPPGERMDA ATFDKVRNQV PRTQDIMAQR SEERKKMLGL NKRARTTVAD VRGDARISAL ARQHVIEKGS DSPPSVSGES 0201: VRIEEKIRRL PVGGEGWETR MKRKRSVATL GNRIMNPEQR VMQPKPTADS KLRSCDSQNF RSKSSPGVSG INRLDTSFEP DSPCMGALSR NELETVSIAR 0301: DRSVLAEQRL AKGNNKRNLL DDSPTNSSTA ILKGKVSRAP RTAAIMGVES SAKVDSPSGV LQGSSAHAMA QWVGQRPHKN SRTRRTNVVS PVIKHSESKI 0401: SGQGFATSDF SPRASPGTTG PLSVVDSSPL KMKRELRNAS SPYGLSESED SGAGDNKTRE RAFASGDLFT TPKSGSLLLP TRKNKIQTSH KGGGAWKQGK 0501: SESVSSLTTP GFHPIMVKSE NLPVEKPFHN IKIASDKNRS KYGRPPAKKV KDRKPATRLA SNANTPSDIT GESDDDREDI FAAANSARKA ANLACSGKFW 0601: KKMDHIFAAV NVDDMQNMKD QLNFAQELDK SLSDAILDGY NILGLKLPKA VHRPGVGNVD YSGPTSSCVS GLSFERLDMR KLNESTPLYK RVLSALIEED 0701: DGEEVVQFNG GKNLSLHYAS DDSHCGSCTY IDTEFRERDR MEFEVESSGD FQTPKSGLFD RFSSERSVVS NPFRNGGMSI SVHSNEQWIG DDDLSHSDAA 0801: LGNETYSNSL GQLQAREVNI PNFPVSDTQY QLMSLDERLL LELQSIGVFP EAMPDLAEET MSTDVMELKE GIYQEILNKK KKLEKLIITI QKGKDVEKRK 0901: IEHLAMDQLV ETAHKKRMAC RGSKAAKVNK VTRQVALGFI RRTVARCRKF EETGFSCFSD PALQDILFSS PSNDAKSSEN GGSGTASNTL NEPSNHQAEA 1001: KGSGAVSSTK RREALIDDVI GCASSKVTTS KGSAVLSGGG AQGKRSERED GFRNKNKPKP KENNNNNNGN QSRSTTTSTH PTGPASRGAS NRGVTSGDGA 1101: VDDEAPIDFS KLAFRDLDEI DEQADLGNWF EGLQDIDTAG LDEVPMDDLS FMFG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)