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AT3G27260.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : global transcription factor group E8
Curator
Summary (TAIR10)
Kinase like protein with similarity to yeast BDF1 and human RING3 protein, which have two bromodomains GTE8 has a single bromodomain
Computational
Description (TAIR10)
global transcription factor group E8 (GTE8); FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: bromodomain and extraterminal domain protein 9 (TAIR:AT5G14270.1); Has 14889 Blast hits to 11609 proteins in 999 species: Archae - 15; Bacteria - 2194; Metazoa - 6003; Fungi - 1991; Plants - 973; Viruses - 60; Other Eukaryotes - 3653 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5076eggNOG:KOG1474EMBL:AP000381EMBL:AY062532
EMBL:AY093312EMBL:BX824603EMBL:CP002686EnsemblPlants:AT3G27260
EnsemblPlants:AT3G27260.1entrez:822345ExpressionAtlas:Q9LK27Gene3D:1.20.920.10
GeneID:822345Genevisible:Q9LK27GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0009507hmmpanther:PTHR22880hmmpanther:PTHR22880:SF134
HOGENOM:HOG000242557InParanoid:Q9LK27InterPro:IPR001487InterPro:IPR027353
ncoils:CoilOMA:DALGSFNPaxDb:Q9LK27Pfam:PF00439
Pfam:PF17035Pfam:Q9LK27Pfscan:PS50014Pfscan:PS51525
PhylomeDB:Q9LK27PRIDE:Q9LK27PRINTS:PR00503PRO:PR:Q9LK27
PROSITE:PS50014PROSITE:PS51525ProteinModelPortal:Q9LK27Proteomes:UP000006548
RefSeq:NP_189362.1SMART:SM00297SMR:Q9LK27STRING:3702.AT3G27260.1
SUPFAM:SSF47370TAIR:AT3G27260tair10-symbols:GTE8UniGene:At.27309
UniProt:Q9LK27
Coordinates (TAIR10) chr3:+:10068411..10072403
Molecular Weight (calculated) 90238.30 Da
IEP (calculated) 4.53
GRAVY (calculated) -0.80
Length 813 amino acids
Sequence (TAIR10)
(BLAST)
001: MVESAAFPGG YYRNTFEAPE ESEGSGSSAQ IDTEVTASEN SSTPARKCIM LNSNDEDPYG VQRQVISLYN MSQSERKDLI YRLKLELEQT KIVLKNAELQ
101: RMNPAAVSST SDRVGFSTGQ KISSRVSNSK KPSDFAVGSG KKVRHQNGTS RGWNRGTSGK FESSKETMTS TPNITLMKQC DTLLRKLWSH PHSWVFQAPV
201: DVVKLNIPDY LTTIKHPMDL GTVKKNLASG VYSSPHEFAA DVRLTFTNAM TYNPPGHDVH IMGDILSKLF EARWKTIKKK LPPCSMQTLP AVTLEPNDER
301: KAAISVPPAK KRKMASPVRE SVPEPVKPLM TEVERHRLGR QLESLLDELP AHIIDFLKKH NSNGGEIAED EIEIDIDVLS DEVLVTLRNL LDEYIQNKEA
401: KQTNVEPCEI ELINGSRPSN SSLQRGNEMA DEYVDGNEPP ISRSSSDSDS GSSEDQSDDA KPMVQGDSSK MPETANSEAQ RDENTRIDDL FVGSQSTGAL
501: EQMDICSQQK LSSDESDGQH EGNILETPAS SEKRYRAALL KNRFADIILK AREKPLPQNG IKGDPERLRK EREELVLQKK KEKARLQAEA EAAEDARRQA
601: EAEAAAEAAA EAKRKRELER EAARQALLKM EKTVEINENS RFLEDLEMLS SSAPEQLPSS AEETSPERPL DALGSFNLRG SNPLEQLGLY MKQDDDEEEP
701: EAPAVPKPDE TSTERPLDAL GSFKLGECNP LEQLGLYMKQ DDGEEEEPEA PVVPKPNETS LERPVDAFGS FNLKGSNPLE QLGLYMKQDD DEEEPEAPAV
801: PNLANDVEEG EID
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)