AT3G06670.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : binding | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF625 (InterPro:IPR006887); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49390.1); Has 3148 Blast hits to 2569 proteins in 332 species: Archae - 0; Bacteria - 112; Metazoa - 1464; Fungi - 567; Plants - 205; Viruses - 18; Other Eukaryotes - 782 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:2105908..2113136 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 97295.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.91 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.37 | ||||||||||||||||||||||||||||||||
| Length | 865 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGAPEKSQSN TNSMQRVKVY HLNEDGKWDD RGTGHVSIDF VERSEELSLC VIDEEDNETL LVHPINPEDI YRKQEDTIIS WRDPERSTEL ALSFQETAGC 101: SYVWDQICTM QRNLHFSSLN SETFHSLNSE LRELPAVELT TLPLILKIVT ESGITDQMRL TELILKDHDF FRNLMGVFKI CEDLENVDGL HMIFNIVKGI 201: ILLNSSQILE KIFGDELIME IIGCLEYDPG VPHSQHHRNF LKEHVVFKEA IPIKDPLVLS KIHQTYRIGY LKDVVLARVL DDAIVANLNS VIHANNAIVV 301: SLLKDDSTFI QELFARLRSP STSMESKKNL VYFLHEFCSL SKSLQVVQQL RLFRDLINEG IFHVIEEVLQ IPDKKLVLTG TDILILFLTQ DPNLLRSYVV 401: RTEGNPLLGL LVKGMMEDFG DKMHCQFLEI IRTLLDANAL SGGAQRANIM DIFYEKHLPE LVDVITASCP EKSSNASEGA ARRIFTKPEV LLNICELLCF 501: CIMQDASRTK CSFLQNNVTE KVLHLTRRKE KYLVVAAIRF VRTLLSVHDD YVQNYVVKNN LLKPIIDVFI ANGTRYNLLN SAVLDLLEHI RKGNATLLLK 601: YIVDTFWDQL APFQCLTSIQ AFKVKYEQCL ESAGPKSTSD AVDPRRRVDE RALEKEEEDY FNEDSDEEDS ASASNTQKEK PASNIQKEQP KPHLSNGVAA 701: SPTSSSPRSG GLVDYEDDED DEDYKPPPRK QPEASEDEEG ELLRLKRKSA LVEREQEPSK KPRLGKSSKR ENVFAVLCST LSHAVLTGKK SPGPAGSAAR 801: SIVAKGAEDS KSSEENNSSS SDDENHKDDG VSSSEHETSD NGKLNGEESL VVAPKSSPEM AVNGS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)