AT5G35210.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : metalloendopeptidases;zinc ion binding;DNA binding | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
metalloendopeptidases;zinc ion binding;DNA binding; FUNCTIONS IN: DNA binding, metalloendopeptidase activity, zinc ion binding; INVOLVED IN: proteolysis, regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast envelope; EXPRESSED IN: male gametophyte; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: DDT domain (InterPro:IPR004022), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Peptidase M50 (InterPro:IPR008915), DDT domain superfamily (InterPro:IPR018501), DDT domain, subgroup (InterPro:IPR018500), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT5G22760.1); Has 4444 Blast hits to 4001 proteins in 349 species: Archae - 111; Bacteria - 223; Metazoa - 2462; Fungi - 377; Plants - 907; Viruses - 0; Other Eukaryotes - 364 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:13474499..13482238 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 189220.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.70 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1706 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEAKVPRPRG RPRKRQRLED DNRKLNNRGK KQVLEVEPAV PISLLGCYML KDFDDNEVFL GKIVSYDTGL YRVIYEDGDC EELESGDLRR LIISDSYLDD 0101: ELRVRRKKLD KLILKKEEKK KRNSPENKAV ELPNQVNGVQ ARAVTNSEDG DSYSDSESSE SGDKRGSDLE IEAPLVPPVD LPPSSGTIGI PEEAVAHLLS 0201: VYGFLRSFSF QLYICPFELN DFVGALYFSG PNSLLDAVHV ALLRALKGHL ERLSSSKSVL ASKCLRCIDW SLLDVLTWPV YLVQYFTAMG HASGPQWNIF 0301: NKFVVEIEYY SLPIGMKLKI LQILCDDIFD VADLRDEIDA REESEIGFDP DRVATGLLEN VPRRVHPRFA KTSAYKEKEV TDSSTNESKD LDSRCTNGGS 0401: NEVSSDLDGN SDECRICGMD GTLLCCDGCP LAYHSRCIGV VKMYIPDGPW FCPECTINKK GPKIAHGTSL RGAVQFGMDP HGRLFLGTCN HLLVLNISVN 0501: GDAVVKYYNV NDISKVVLVL ISASSHTLEY VEICKAITQY WDLPEGISLR EGEIGLTQAK DREDGKVSEI TKSDSANISN RSHTQTVFDL PTSTLGNTNS 0601: AVTGGSCGIQ GKKLAARVTY LGLSFKPNTY NNHYTNGELA VSAAASLAVL SSEETHEPDL RKYNSAKKAA SSNILEQMKA FSLVAPRFFW PSPDKKEITR 0701: ERCGWCHSCR LTSASRRGCM LNAAVAGATK GAMKIFSGLF PLKNGEGVLS SIAAYILYLE ESLRGLIAGP FLSESPRKQW RKQVEEASTC KALKAPLLEL 0801: EENICSIALS CDWFKQMDDW LIEHSIFQSA PVTLGVPQRR GPGRTKQNTQ AEVTAEGSDA DSFTWWRGGK LSKVILLKAV LSQPATKKAA WQGGSKKIPG 0901: LNYGDASYIP RRSRRSFWKA AVESSKNISQ LALQVRYLDM SLRWRELVRP DQNLQNVKGP ETDVAIFRNA RICDKKLSDN KVSYGVFFGN QKHLPSRVMK 1001: NIMEVEKTQD RNEKYWLQEA HVPLYLIKEF EESLHRVQMP SSTKKPSKKL SKLQRKQLKA SLMDIFSYIA SRRDKMEKCS CASCDHDVLL RDTTTCSSCH 1101: GFCHKDCTSM SQHTNGNVEV LVTCKRCYLS KTRVPTNINH RQSTAPQFTI NVRHQNAVIP VIKVKPPSQQ LSSQKPRENT SGVKQVTPDS SVSKSKQKTL 1201: SCGVIWRKKN VEDTGVDFRN QNILLAGRSD KPSLEPVCGI CLLPYNPGLT YIHCTKCEKW FHTEAVKLKD SQIPEVVGFK CCKCRRIRSP DCPYMDPKLK 1301: EQKQIKRIVF TNQKQRQGNS GLDSDSERMS EQKDSKPSTP LPATPLYPPD DVFIPEDDPL LVSVSKVKQI TPSSFDLEWS TTAFAPGPQK LPVRRQVKRE 1401: DSDAAYPELH PIVKPEAEEQ ALPVLTEWDL SGELLFDYED MEFEPQTYFS LTELLTADDS GGGQYQENGD MVVSGNPQFE PTEKEECEDD MGPCQRCLQM 1501: DPAPDLLCTV CGLLIHSHCS PWSALPGSSW SCGQCRIRAL GSITLGSFGA ITQFKSILPD RSTKVDISLA GPFAGAALSV SMFAVGLFLS TEPDAANDLV 1601: QVPSMLFQGS LLLGLISRAT LGYAALHAAT VSIHPLVIAG WCGLTTTAFN MLPVGCLDGG RAVQGAFGKN ALVTFGLSTY VMLGLRVLGG PLALPWGLYV 1701: LICRNT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)