AT1G21610.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : wound-responsive family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
wound-responsive family protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77310.1); Has 560 Blast hits to 534 proteins in 143 species: Archae - 0; Bacteria - 34; Metazoa - 261; Fungi - 64; Plants - 78; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:7574104..7578643 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 76334.20 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.52 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.86 | ||||||||||||||||||||||||
| Length | 684 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSEVNEMSGG SIGGELLRAS PKVLTAGDRK LLKVELRPGD TTYVSWKKLM RDAGKVNGLS ASVPDPPPNA NPNLEFRIAP GHPVEIETNE QPHSNRFNAV 101: IEKIERLYKG NDSSDGEELD GAPDDDEYDT EDSFIDDAEL DEYFEVDNST VKHDGFYVNR GKLERMEPST TSNQQPKKRR RKDSAKPCRD AVDVSDKHTK 201: LSITARKKDQ STAPGSWKTQ ESPLPSGAQD ANTSVPLDDV KHSDRANHQS RNDTSHKSRE TGSSSALHQK YSNKSLHQQS TSLLGKSPPN VFAEVTVVRQ 301: KENNGMHQLA NVTGSRQSSQ ASKKDGSNVK SKTSILEKAI RELEKVVVES RPPAITENQE ADTSSQAVKR RLPRDVKLKL AKVARIAQAS QGKHSTELIN 401: RLMSIVGHLI QLRSLKRNLK IMIDMGDSAT REKDTRFKQI NNEVLDMIKA KVSLMESQAI KPEGATSDDF QDSVEKPSLK KFVMDAALED KLCDLYDIFI 501: DGLDEDQGPQ TKKLYVNLAE LWPNRLMDYR GIKHAIFRAK ERRKALYGNL AKEMDQTKMK KSMKQLVPRT DCTAQPNTEL VVQRQHSGEK KLIVDPNATS 601: TSVVTSQTMV DRSNQQQPEK LKGISSSCNP TEETRVVKRK NEAVMAEKQV VLALKKPEHP QTRVIPAPQN LNIPRTTPDL NLPS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)