AT4G25520.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : SEUSS-like 1 | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
SEUSS-like 1 (SLK1); BEST Arabidopsis thaliana protein match is: SEUSS-like 3 (TAIR:AT4G25515.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:-:13032450..13035803 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 83319.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.95 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.71 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 748 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MNRTVVSGAV ESSFSLTDAV GTEALNMQRS SGINNNMRIP TSPMSFSSNS VNIPGSLVLD GSAASMQHLP QQQQQQLLQQ QTGQGSVPMR ENNYSHVDKK 101: PRLEVKQEDM LQQQILQQLI QRQDPTGRNP QMQALLQQQR LRQHQQMLQS MSPSQRLQLQ QQQQLRQQLQ QQGTQQIPPN VRPYEVGVCA RKLMMYLYHL 201: QQRPAENCIT YWRKFVAEYF SPRAKQRLCL SQYESAGHHA LGMFPQAAPD MWQCDLCGTK SGKGFEATFD VLARLIEIKF ASGIIDELLY LDHPRENRFP 301: NGLMMLEYRK AVQETVHEQF RVVREGHLRI IFSQDLKILS WEFCARRHEE LLLRRLIAPQ VNQLLQVAQK CQSTISESGS EGVSQQDLQS NSNMVLGAGR 401: QLAKFMELQS LNDLGYPKRY IRTLQISEVV KSMKDLMNFT GEQKIGPIEG LKRLLEQTVT VKLQKQKMQE MEQFGNNGAI NGPVQAQMVL TSGTMNGSTG 501: NNTNNHHQIV GRGAMSGPAE GQMVISSGTV SGATANNNSN NHNQIVGRGA MNGSAQAAAA LTNYQSMLMR QNAMNNPNSN TGKQEGFSSQ NPTPNSNQSP 601: SSSSQQRHNL VTGGFPNSPQ MQQQQRTMNG PTNILPQNHP HQLQSPHSHG NTPEQQMLHQ LLQEMSENGG SVQQQQAFSG QSGSNSNAER NTTASTSNIS 701: GGGRAPSRNN SFKAASNNNL HFSEDISITD HDFSEDGFFN NNDIYGGL |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)