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AT4G25520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SEUSS-like 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SEUSS-like 1 (SLK1); BEST Arabidopsis thaliana protein match is: SEUSS-like 3 (TAIR:AT4G25515.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:13944eggNOG:ENOG410IIDEeggNOG:ENOG41126CVEMBL:AK226715
EMBL:AL022197EMBL:AL161563EMBL:BT012580EMBL:CP002687
EnsemblPlants:AT4G25520EnsemblPlants:AT4G25520.1entrez:828657GeneID:828657
Genevisible:Q0WVM7GO:GO:0005634GO:GO:0006351GO:GO:0006355
GO:GO:0009793GO:GO:0030154GO:GO:0047484GO:GO:0048467
GO:GO:0048481GO:GO:1901001Gramene:AT4G25520.1hmmpanther:PTHR10378
hmmpanther:PTHR10378:SF9HOGENOM:HOG000082642InParanoid:Q0WVM7InterPro:IPR029005
KEGG:ath:AT4G25520OMA:QQRTMNGPANTHER:PTHR10378PaxDb:Q0WVM7
Pfam:PF01803Pfam:Q0WVM7PhylomeDB:Q0WVM7PIR:H85294
PIR:T05795PRIDE:Q0WVM7PRO:PR:Q0WVM7ProteinModelPortal:Q0WVM7
Proteomes:UP000006548RefSeq:NP_194282.2STRING:3702.AT4G25520.1TAIR:AT4G25520
tair10-symbols:SLK1UniGene:At.27857UniProt:Q0WVM7
Coordinates (TAIR10) chr4:-:13032450..13035803
Molecular Weight (calculated) 83319.50 Da
IEP (calculated) 8.95
GRAVY (calculated) -0.71
Length 748 amino acids
Sequence (TAIR10)
(BLAST)
001: MNRTVVSGAV ESSFSLTDAV GTEALNMQRS SGINNNMRIP TSPMSFSSNS VNIPGSLVLD GSAASMQHLP QQQQQQLLQQ QTGQGSVPMR ENNYSHVDKK
101: PRLEVKQEDM LQQQILQQLI QRQDPTGRNP QMQALLQQQR LRQHQQMLQS MSPSQRLQLQ QQQQLRQQLQ QQGTQQIPPN VRPYEVGVCA RKLMMYLYHL
201: QQRPAENCIT YWRKFVAEYF SPRAKQRLCL SQYESAGHHA LGMFPQAAPD MWQCDLCGTK SGKGFEATFD VLARLIEIKF ASGIIDELLY LDHPRENRFP
301: NGLMMLEYRK AVQETVHEQF RVVREGHLRI IFSQDLKILS WEFCARRHEE LLLRRLIAPQ VNQLLQVAQK CQSTISESGS EGVSQQDLQS NSNMVLGAGR
401: QLAKFMELQS LNDLGYPKRY IRTLQISEVV KSMKDLMNFT GEQKIGPIEG LKRLLEQTVT VKLQKQKMQE MEQFGNNGAI NGPVQAQMVL TSGTMNGSTG
501: NNTNNHHQIV GRGAMSGPAE GQMVISSGTV SGATANNNSN NHNQIVGRGA MNGSAQAAAA LTNYQSMLMR QNAMNNPNSN TGKQEGFSSQ NPTPNSNQSP
601: SSSSQQRHNL VTGGFPNSPQ MQQQQRTMNG PTNILPQNHP HQLQSPHSHG NTPEQQMLHQ LLQEMSENGG SVQQQQAFSG QSGSNSNAER NTTASTSNIS
701: GGGRAPSRNN SFKAASNNNL HFSEDISITD HDFSEDGFFN NNDIYGGL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)