AT4G16280.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA binding;abscisic acid binding | ||||||||||||
| Curator Summary (TAIR10) |
Involved in the promotion of the transition of the vegetative meristem to reproductive development. Four forms of the protein (alpha, beta, delta and gamma) are produced by alternative splicing. Involved in RNA-mediated chromatin silencing. At one point it was believed to act as an abscisic acid receptor but the paper describing that function was retracted. | ||||||||||||
| Computational Description (TAIR10) |
FCA; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Ribonucleoprotein, BRUNO-like (InterPro:IPR015903), WW/Rsp5/WWP (InterPro:IPR001202), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: flowering time control protein-related / FCA gamma-related (TAIR:AT2G47310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:9207164..9210632 | ||||||||||||
| Molecular Weight (calculated) | 54983.30 Da | ||||||||||||
| IEP (calculated) | 10.28 | ||||||||||||
| GRAVY (calculated) | -0.87 | ||||||||||||
| Length | 505 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRDEYRQSRG CGFVKYSSKE TAMAAIDGLN GTYTMRGCNQ PLIVRFAEPK RPKPGESREM APPVGLGSGP RFQASGPRPT SNFGDSSGDV SHTNPWRPAT 101: SRNVGPPSNT GIRGAGSDFS PKPGQATLPS NQGGPLGGYG VPPLNPLPVP GVSSSATLQQ QNRAAGQHIT PLKKPLHSPQ GLPLPLRPQT NFPGAQAPLQ 201: NPYAYSSQLP TSQLPPQQNI SRATAPQTPL NINLRPTTVS SATVQFPPRS QQQPLQKMQH PPSELAQLLS QQTQSLQATF QSSQQAISQL QQQVQSMQQP 301: NQNLPLSQNG RAGKQQWAGS AIPRVASTTG STPVSYVQTA APAVSQSVGS VKCTWTEHTS PDGFKYYYNG LTGESKWEKP EEMIVFEREQ QKQQQHQEKP 401: TIQQSQTQLQ PLQQQPQQVQ QQYQGQQLQQ PFYSSLYPTP GASHNTQYPS LPVGQNSQFP MSGIGQNAQD YARTHIPVGA ASMNDISRTQ QSRQSPQELM 501: WKNKA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)