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AT5G64220.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains; FUNCTIONS IN: calmodulin binding, transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), CG-1 (InterPro:IPR005559), IQ calmodulin-binding region (InterPro:IPR000048), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ethylene induced calmodulin binding protein (TAIR:AT5G09410.2); Has 14517 Blast hits to 9081 proteins in 522 species: Archae - 46; Bacteria - 904; Metazoa - 8296; Fungi - 946; Plants - 937; Viruses - 67; Other Eukaryotes - 3321 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XS5MeggNOG:KOG0520EMBL:AB008268EMBL:BT010874
EMBL:CP002688EnsemblPlants:AT5G64220EnsemblPlants:AT5G64220.1EnsemblPlants:AT5G64220.2
entrez:836543ExpressionAtlas:Q6NPP4Gene3D:1.25.40.20GeneID:836543
Genevisible:Q6NPP4GO:GO:0001077GO:GO:0003700GO:GO:0005634
GO:GO:0006355GO:GO:0006366GO:GO:0009409GO:GO:0043565
GO:GO:0045893GO:GO:0045944GO:GO:0071275Gramene:AT5G64220.1
Gramene:AT5G64220.2hmmpanther:PTHR23335hmmpanther:PTHR23335:SF12HOGENOM:HOG000240102
InParanoid:Q6NPP4InterPro:IPR000048InterPro:IPR002110InterPro:IPR005559
InterPro:IPR014756InterPro:IPR020683InterPro:IPR027417iPTMnet:Q6NPP4
KEGG:ath:AT5G64220ncoils:CoilOMA:FHIASEPPaxDb:Q6NPP4
Pfam:PF00612Pfam:PF03859Pfam:PF12796Pfam:Q6NPP4
Pfscan:PS50088Pfscan:PS50096Pfscan:PS50297Pfscan:PS51437
PhylomeDB:Q6NPP4PRIDE:Q6NPP4PRO:PR:Q6NPP4PROSITE:PS50088
PROSITE:PS50096PROSITE:PS50297PROSITE:PS51437ProteinModelPortal:Q6NPP4
Proteomes:UP000006548RefSeq:NP_001032135.1RefSeq:NP_201227.3SMART:SM00015
SMART:SM00248SMART:SM01076SMR:Q6NPP4STRING:3702.AT5G64220.1
SUPFAM:SSF48403SUPFAM:SSF52540SUPFAM:SSF81296TAIR:AT5G64220
UniGene:At.28963UniGene:At.67020UniProt:Q0WNN4UniProt:Q6NPP4
Coordinates (TAIR10) chr5:+:25686434..25691903
Molecular Weight (calculated) 117264.00 Da
IEP (calculated) 6.39
GRAVY (calculated) -0.52
Length 1050 amino acids
Sequence (TAIR10)
(BLAST)
0001: MADRGSFGFA PRLDIKQLLS EAQHRWLRPA EICEILRNHQ KFHIASEPPN RPPSGSLFLF DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH
0101: CYYAHGEDNE NFQRRCYWML EQDLMHIVFV HYLEVKGNRM STSGTKENHS NSLSGTGSVN VDSTATRSSI LSPLCEDADS GDSRQASSSL QQNPEPQTVV
0201: PQIMHHQNAS TINSYNTTSV LGNRDGWTSA HGNRVKGSNS QRSGDVPAWD ASFENSLARY QNLPYNAPLT QTQPSTFGLI PMEGKTEKGS LLTSEHLRNP
0301: LQSQVNWQTP VQESVPLQKW PMDSHSGMTD ATDLALFGQG AHENFGTFSS LLGSQDQQSS SFQAPFTNNE AAYIPKLGPE DLIYEASANQ TLPLRKALLK
0401: KEDSLKKVDS FSRWVSKELG EMEDLQMQSS SGGIAWTSVE CENAAAGSSL SPSLSEDQRF TMIDFWPKWT QTDSEVEVMV IGTFLLSPQE VTSYSWSCMF
0501: GEVEVPADIL VDGVLCCHAP PHEVGRVPFY ITCSDRFSCS EVREFDFLPG STRKLNATDI YGANTIETSL HLRFENLLAL RCSVQEHHIF ENVGEKRRKI
0601: SKIMLLKDEK EPPLPGTIEK DLTELEAKER LIREEFEDKL YLWLIHKVTE EGKGPNILDE DGQGVLHLAA ALGYDWAIKP ILAAGVSINF RDANGWSALH
0701: WAAFSGREDT VAVLVSLGAD AGALADPSPE HPLGKTAADL AYGNGHRGIS GFLAESSLTS YLEKLTVDAK ENSSADSSGA KAVLTVAERT ATPMSYGDVP
0801: ETLSMKDSLT AVLNATQAAD RLHQVFRMQS FQRKQLSELG GDNKFDISDE LAVSFAAAKT KKSGHSSGAV HAAAVQIQKK YRGWKKRKEF LLIRQRIVKI
0901: QAHVRGHQVR KQYRAIIWSV GLLEKIILRW RRKGSGLRGF KRDTISKPTE PVCPAPQEDD YDFLKEGRKQ TEERLQKALT RVKSMAQYPE ARAQYRRLLT
1001: VVEGFRENEA SSSSALKNNT EEAANYNEED DLIDIDSLLD DDTFMSLAFE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)