AT1G20980.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : squamosa promoter binding protein-like 14 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a nuclear plant-specific protein with features characteristic of a transcriptional regulator, including a nuclear localization signal sequence, a plant-specific DNA binding domain (the SBP box), and a protein interaction motif (ankyrin repeats). It unctions as a transcriptional regulator that plays a role not only in sensitivity to FB1, but also in the development of normal plant architecture. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
squamosa promoter binding protein-like 14 (SPL14); FUNCTIONS IN: DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: defense response to bacterium, regulation of transcription; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (TAIR:AT1G76580.1); Has 1851 Blast hits to 1143 proteins in 117 species: Archae - 0; Bacteria - 38; Metazoa - 215; Fungi - 101; Plants - 958; Viruses - 0; Other Eukaryotes - 539 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:7325042..7328933 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 114820.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.47 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.48 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1035 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDEVGAQVAA PMFIHQSLGR KRDLYYPMSN RLVQSQPQRR DEWNSKMWDW DSRRFEAKPV DVEVQEFDLT LRNRSGEERG LDLNLGSGLT AVEETTTTTQ 0101: NVRPNKKVRS GSPGGNYPMC QVDNCTEDLS HAKDYHRRHK VCEVHSKATK ALVGKQMQRF CQQCSRFHLL SEFDEGKRSC RRRLAGHNRR RRKTTQPEEV 0201: ASGVVVPGNH DTTNNTANAN MDLMALLTAL ACAQGKNAVK PPVGSPAVPD REQLLQILNK INALPLPMDL VSKLNNIGSL ARKNMDHPTV NPQNDMNGAS 0301: PSTMDLLAVL STTLGSSSPD ALAILSQGGF GNKDSEKTKL SSYENGVTTN LEKRTFGFSS VGGERSSSSN QSPSQDSDSR GQDTRSSLSL QLFTSSPEDE 0401: SRPTVASSRK YYSSASSNPV EDRSPSSSPV MQELFPLQAS PETMRSKNHK NSSPRTGCLP LELFGASNRG AADPNFKGFG QQSGYASSGS DYSPPSLNSD 0501: AQDRTGKIVF KLLDKDPSQL PGTLRSEIYN WLSNIPSEME SYIRPGCVVL SVYVAMSPAA WEQLEQKLLQ RLGVLLQNSP SDFWRNARFI VNTGRQLASH 0601: KNGKVRCSKS WRTWNSPELI SVSPVAVVAG EETSLVVRGR SLTNDGISIR CTHMGSYMAM EVTRAVCRQT IFDELNVNSF KVQNVHPGFL GRCFIEVENG 0701: FRGDSFPLII ANASICKELN RLGEEFHPKS QDMTEEQAQS SNRGPTSREE VLCFLNELGW LFQKNQTSEL REQSDFSLAR FKFLLVCSVE RDYCALIRTL 0801: LDMLVERNLV NDELNREALD MLAEIQLLNR AVKRKSTKMV ELLIHYLVNP LTLSSSRKFV FLPNITGPGG ITPLHLAACT SGSDDMIDLL TNDPQEIGLS 0901: SWNTLRDATG QTPYSYAAIR NNHNYNSLVA RKLADKRNKQ VSLNIEHEVV DQTGLSKRLS LEMNKSSSSC ASCATVALKY QRRVSGSQRL FPTPIIHSML 1001: AVATVCVCVC VFMHAFPIVR QGSHFSWGGL DYGSI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)