suba logo
AT1G20980.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : squamosa promoter binding protein-like 14
Curator
Summary (TAIR10)
Encodes a nuclear plant-specific protein with features characteristic of a transcriptional regulator, including a nuclear localization signal sequence, a plant-specific DNA binding domain (the SBP box), and a protein interaction motif (ankyrin repeats). It unctions as a transcriptional regulator that plays a role not only in sensitivity to FB1, but also in the development of normal plant architecture.
Computational
Description (TAIR10)
squamosa promoter binding protein-like 14 (SPL14); FUNCTIONS IN: DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: defense response to bacterium, regulation of transcription; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (TAIR:AT1G76580.1); Has 1851 Blast hits to 1143 proteins in 117 species: Archae - 0; Bacteria - 38; Metazoa - 215; Fungi - 101; Plants - 958; Viruses - 0; Other Eukaryotes - 539 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIZ6eggNOG:ENOG4110DQFEMBL:AC007369EMBL:AJ242957
EMBL:AJ243094EMBL:AY074499EMBL:CP002684EnsemblPlants:AT1G20980
EnsemblPlants:AT1G20980.1entrez:838692Gene3D:1.25.40.20Gene3D:4.10.1100.10
GeneID:838692Genevisible:Q8RY95GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0005737GO:GO:0005886GO:GO:0006351
GO:GO:0006355GO:GO:0042742GO:GO:0045893GO:GO:0046872
Gramene:AT1G20980.1hmmpanther:PTHR31251hmmpanther:PTHR31251:SF3HOGENOM:HOG000082688
InParanoid:Q8RY95InterPro:IPR004333InterPro:IPR020683iPTMnet:Q8RY95
KEGG:ath:AT1G20980ncoils:CoilOMA:ERDYCALPaxDb:Q8RY95
Pfam:PF03110Pfam:Q8RY95Pfscan:PS50297Pfscan:PS51141
PhylomeDB:Q8RY95PIR:G86342PIR:T52569PRIDE:Q8RY95
PRO:PR:Q8RY95PROSITE:PS50297PROSITE:PS51141ProteinModelPortal:Q8RY95
Proteomes:UP000006548RefSeq:NP_173522.1SMR:Q8RY95STRING:3702.AT1G20980.1
SUPFAM:SSF103612SUPFAM:SSF48403TAIR:AT1G20980tair10-symbols:ATSPL14
tair10-symbols:FBR6tair10-symbols:SPL14tair10-symbols:SPL1R2TMHMM:TMhelix
UniGene:At.21192UniProt:Q8RY95
Coordinates (TAIR10) chr1:+:7325042..7328933
Molecular Weight (calculated) 114820.00 Da
IEP (calculated) 8.47
GRAVY (calculated) -0.48
Length 1035 amino acids
Sequence (TAIR10)
(BLAST)
0001: MDEVGAQVAA PMFIHQSLGR KRDLYYPMSN RLVQSQPQRR DEWNSKMWDW DSRRFEAKPV DVEVQEFDLT LRNRSGEERG LDLNLGSGLT AVEETTTTTQ
0101: NVRPNKKVRS GSPGGNYPMC QVDNCTEDLS HAKDYHRRHK VCEVHSKATK ALVGKQMQRF CQQCSRFHLL SEFDEGKRSC RRRLAGHNRR RRKTTQPEEV
0201: ASGVVVPGNH DTTNNTANAN MDLMALLTAL ACAQGKNAVK PPVGSPAVPD REQLLQILNK INALPLPMDL VSKLNNIGSL ARKNMDHPTV NPQNDMNGAS
0301: PSTMDLLAVL STTLGSSSPD ALAILSQGGF GNKDSEKTKL SSYENGVTTN LEKRTFGFSS VGGERSSSSN QSPSQDSDSR GQDTRSSLSL QLFTSSPEDE
0401: SRPTVASSRK YYSSASSNPV EDRSPSSSPV MQELFPLQAS PETMRSKNHK NSSPRTGCLP LELFGASNRG AADPNFKGFG QQSGYASSGS DYSPPSLNSD
0501: AQDRTGKIVF KLLDKDPSQL PGTLRSEIYN WLSNIPSEME SYIRPGCVVL SVYVAMSPAA WEQLEQKLLQ RLGVLLQNSP SDFWRNARFI VNTGRQLASH
0601: KNGKVRCSKS WRTWNSPELI SVSPVAVVAG EETSLVVRGR SLTNDGISIR CTHMGSYMAM EVTRAVCRQT IFDELNVNSF KVQNVHPGFL GRCFIEVENG
0701: FRGDSFPLII ANASICKELN RLGEEFHPKS QDMTEEQAQS SNRGPTSREE VLCFLNELGW LFQKNQTSEL REQSDFSLAR FKFLLVCSVE RDYCALIRTL
0801: LDMLVERNLV NDELNREALD MLAEIQLLNR AVKRKSTKMV ELLIHYLVNP LTLSSSRKFV FLPNITGPGG ITPLHLAACT SGSDDMIDLL TNDPQEIGLS
0901: SWNTLRDATG QTPYSYAAIR NNHNYNSLVA RKLADKRNKQ VSLNIEHEVV DQTGLSKRLS LEMNKSSSSC ASCATVALKY QRRVSGSQRL FPTPIIHSML
1001: AVATVCVCVC VFMHAFPIVR QGSHFSWGGL DYGSI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)