AT3G17920.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.995 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Outer arm dynein light chain 1 protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Outer arm dynein light chain 1 protein; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Outer arm dynein light chain 1 protein (TAIR:AT1G48540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:6137255..6142023 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 114666.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.87 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||
| Length | 1010 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAIVTGDRYL ENLQRFLDEK ADLLIDGTDV LKLNPAGLHY VHLRLESLRE LELMLSGAPV DYLRAYVSDI GDFRALEQLR RILRLLPSLK VVSSLPSPAR 0101: DPTPLSLLPF SKLKVLELRG CDLSTSSAKG LLELRHTLEK LICHNSTDAL RHVFASRIAE IKDSPQWNKL AFISCACNRL VLMDESLQLL PAVESLDLSR 0201: NKFAKVDNLR RCNKLKHLDL GFNQLRKISH LSEVSCHLVK LVLRNNALTT LRGIENLKSL EGLDVSFNLI SDFSELEFLG SLSFLTDLWL EGNPICCARW 0301: YRAHVLSYVY LPNDLKLDGK HIGNREFWKR QVVVTRRKSQ PASYGFYSPA RDEADDEGSF TRKKTKIYRL ASIDSEEEST YVNSDQESAS CEPETQSKEE 0401: NIKSDHEADV FGLICKVEQL KKERSVLWLR EFKEWIDHPS EDFVDVSKNG SSTDSEQKYY MKNRNGPKHH GETMRYTPGP LPSFQITDLN QKHQAFFLDG 0501: KPDENGNMST LDASQDMTGS FSPSSPPHYQ KDVLHRRQNL VEEILQISAD SYSVASSDSS CSENENYDSE QSNPEQDTLK DHLSGNRGED TSLLDSQPEK 0601: SSIIKSWKIE DSFKAKTTNF LSGLHKSELA SGVNQIYRWF DKKQSKRKPK KRNVSPLEEY SFIKKGETSH RSDADIIDSC EDEYISDHFQ EGSLTTGCNS 0701: KRSTRFLETE KSLEGMGGLV EEFFTTTLSD SSNDETCRIY VSCDCILQQE STYKQREVVL LLSSQEKLYV LLVGVSTDLQ ESSLSLLCSH TIGDIRDVSV 0801: GLGLQVVRLR FREDAEYIFM TASIEKTTVL LNIIKFLDYQ VTESKFSLKS LENVQVELFE KEICSGLKLS IFQYIVLHFQ SSTFGEVSWL PRSLFVAGGH 0901: LFICNEDFRQ LSFLPTDDAS SSPYFSLDSS CSISDIFEMV VESRGSSCLS LKVKQKDSTF QSSQKRTVNS VTWKLKLLSP ECVPKFVALV NGLHPDSTEF 1001: PLFVRHLGER |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)