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AT1G09060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, RING-type (InterPro:IPR001841), Transcription factor jumonji (InterPro:IPR013129), WRC (InterPro:IPR014977), Cell division cycle-associated protein (InterPro:IPR018866); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT4G00990.1); Has 1115 Blast hits to 1061 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 398; Fungi - 30; Plants - 639; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XTAAeggNOG:KOG1356EMBL:AK317241EMBL:CP002684
EnsemblPlants:AT1G09060EnsemblPlants:AT1G09060.1EnsemblPlants:AT1G09060.2entrez:837427
ExpressionAtlas:B9DGQ5GeneID:837427GO:GO:0008270Gramene:AT1G09060.1
Gramene:AT1G09060.2hmmpanther:PTHR12549hmmpanther:PTHR12549:SF17InterPro:IPR001841
InterPro:IPR003347InterPro:IPR014977InterPro:IPR018866ncoils:Coil
Pfam:PF02373Pfam:PF08879Pfam:PF10497Pfscan:PS50089
Pfscan:PS51184Pfscan:PS51667PROSITE:PS50089PROSITE:PS51184
PROSITE:PS51667Proteomes:UP000006548Reactome:R-ATH-983231RefSeq:NP_172380.2
RefSeq:NP_973798.1SMART:SM00558SMR:B9DGQ5STRING:3702.AT1G09060.3
SUPFAM:SSF51197TAIR:AT1G09060UniGene:At.10382UniProt:B9DGQ5
Coordinates (TAIR10) chr1:-:2921235..2925212
Molecular Weight (calculated) 105597.00 Da
IEP (calculated) 5.71
GRAVY (calculated) -0.61
Length 930 amino acids
Sequence (TAIR10)
(BLAST)
001: MNANEQTRSA NGIGNGNGES IPGIPDDLRC KRSDGKQWRC TAMSMADKTV CEKHYIQAKK RAANSAFRAN QKKAKRRSSL GETDTYSEGK MDDFELPVTS
101: IDHYNNGLAS ASKSNGRLEK RHNKSLMRYS PETPMMRSFS PRVAVDLNDD LGRDVVMFEE GYRSYRTPPS VAVMDPTRNR SHQSTSPMEY SAASTDVSAE
201: SLGEICHQCQ RKDRERIISC LKCNQRAFCH NCLSARYSEI SLEEVEKVCP ACRGLCDCKS CLRSDNTIKV RIREIPVLDK LQYLYRLLSA VLPVIKQIHL
301: EQCMEVELEK RLREVEIDLV RARLKADEQM CCNVCRIPVV DYYRHCPNCS YDLCLRCCQD LREESSVTIS GTNQNVQDRK GAPKLKLNFS YKFPEWEANG
401: DGSIPCPPKE YGGCGSHSLN LARIFKMNWV AKLVKNAEEI VSGCKLSDLL NPDMCDSRFC KFAEREESGD NYVYSPSLET IKTDGVAKFE QQWAEGRLVT
501: VKMVLDDSSC SRWDPETIWR DIDELSDEKL REHDPFLKAI NCLDGLEVDV RLGEFTRAYK DGKNQETGLP LLWKLKDWPS PSASEEFIFY QRPEFIRSFP
601: FLEYIHPRLG LLNVAAKLPH YSLQNDSGPK IYVSCGTYQE ISAGDSLTGI HYNMRDMVYL LVHTSEETTF ERVRKTKPVP EEPDQKMSEN ESLLSPEQKL
701: RDGELHDLSL GEASMEKNEP ELALTVNPEN LTENGDNMES SCTSSCAGGA QWDVFRRQDV PKLSGYLQRT FQKPDNIQTD FVSRPLYEGL FLNEHHKRQL
801: RDEFGVEPWT FEQHRGEAIF IPAGCPFQIT NLQSNIQVAL DFLCPESVGE SARLAEEIRC LPNDHEAKLQ ILEIGKISLY AASSAIKEVQ KLVLDPKFGA
901: ELGFEDSNLT KAVSHNLDEA TKRPQQNSCT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)