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AT1G01950.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.987
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : armadillo repeat kinesin 2
Curator
Summary (TAIR10)
Encodes a member of the armadillo/beta-catenin repeat kinesin motor family. Mutants have twisted roots due to abnormal cell file rotation; the phenotype is dependent on microtubules.
Computational
Description (TAIR10)
armadillo repeat kinesin 2 (ARK2); FUNCTIONS IN: microtubule motor activity, binding, ATP binding; INVOLVED IN: root development; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: armadillo repeat kinesin 3 (TAIR:AT1G12430.1); Has 19604 Blast hits to 16795 proteins in 739 species: Archae - 69; Bacteria - 853; Metazoa - 8320; Fungi - 2122; Plants - 2828; Viruses - 22; Other Eukaryotes - 5390 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-653-MONOMERBioCyc:ARA:GQT-654-MONOMERBioCyc:ARA:GQT-655-MONOMEReggNOG:COG5059
eggNOG:KOG0240EMBL:AB290929EMBL:AC020622EMBL:AK229671
EMBL:CP002684EnsemblPlants:AT1G01950EnsemblPlants:AT1G01950.1entrez:839306
ExpressionAtlas:Q9LPC6Gene3D:1.25.10.10Gene3D:3.40.850.10GeneID:839306
Genevisible:Q9LPC6GO:GO:0003777GO:GO:0005524GO:GO:0005737
GO:GO:0005874GO:GO:0007018hmmpanther:PTHR24115hmmpanther:PTHR24115:SF533
HOGENOM:HOG000241678InParanoid:Q9LPC6InterPro:IPR000225InterPro:IPR001752
InterPro:IPR011989InterPro:IPR016024InterPro:IPR019821InterPro:IPR027417
InterPro:IPR027640InterPro:IPR033291ncoils:CoilPANTHER:PTHR24115
PANTHER:PTHR24115:SF533PaxDb:Q9LPC6Pfam:PF00225Pfam:PF00514
Pfam:Q9LPC6Pfscan:PS50067Pfscan:PS50176PhylomeDB:Q9LPC6
PIR:D86151PRIDE:Q9LPC6PRINTS:PR00380PRO:PR:Q9LPC6
PROSITE:PS00411PROSITE:PS50067PROSITE:PS50176ProteinModelPortal:Q9LPC6
Proteomes:UP000006548RefSeq:NP_171697.3scanprosite:PS00411SMART:SM00129
SMART:SM00185SMR:Q9LPC6STRING:3702.AT1G01950.3SUPFAM:SSF48371
SUPFAM:SSF52540TAIR:AT1G01950tair10-symbols:ARK2UniGene:At.17002
UniGene:At.66839UniProt:Q9LPC6
Coordinates (TAIR10) chr1:+:325473..330403
Molecular Weight (calculated) 98428.30 Da
IEP (calculated) 7.01
GRAVY (calculated) -0.41
Length 894 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMASSRNGA VRGSMRPVSG ANSSNLRSSS FKSRIPSSAP APRRSSSASI GAADNGVPGR VRVAVRLRPR NADESVADAD FADCVELQPE LKRLKLRKNN
101: WDTETYEFDE VLTEAASQKR VYEVVAKPVV ESVLEGYNGT VMAYGQTGTG KTFTLGRLGD EDTAARGIMV RSMEDIIGGT SLDTDSISVS YLQLYMETIQ
201: DLLDPTNDNI AIVEDPRTGD VSLPGATHVE IRNQQNFLEL LQLGETHRVA ANTKLNTESS RSHAILMVHV KRSVVENEFP VSNEMESSSH FVRPSKPLVR
301: RSKLVLVDLA GSERVHKSGS EGHMLEEAKS INLSLSALGK CINAIAENSP HVPLRDSKLT RLLRDSFGGT ARTSLIVTIG PSPRHRGETT STILFGQRAM
401: KVENMLKIKE EFDYKSLSKK LEVQLDKVIA ENERQLKAFD DDVERINRQA QNRISEVEKN FAEALEKEKL KCQMEYMESV KKLEEKLISN QRNHENGKRN
501: GEVNGVVTAS EFTRLKESLE NEMKLRKSAE EEVSKVKSQS TLKTRSGEGE DAGITRLQKL LEDEALQKKK LEEEVTILRS QLVQLTFEAD QMRRCLDRGA
601: PGNSYSGTDS LPSRHSQARE SVNGQKAPFA TLCEQVGLQK ILQLLESDDA NIRIHAVKVV ANLAAEEANQ EKIVEAGGLT SLLMLLRSYE DETVRRVAAG
701: AIANLAMNEV SQQLIVDQGG ISLLSLTAAD AEDPQTLRMV AGAIANLCGN DKLQARLWSD GGIKALLGMV RCGHPDVLAQ VARGIANFAK CESRATTQGV
801: KSGRSLLIED GALPWIVQHA NDEAAPIRRH IELALCHLAQ HEVNAKEMIS GGALWELVRI SKECSREDIR SLAHRTLSSS PVFRSEIRRL GIQF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)