AT2G24330.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.661 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF2296) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF2296); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2296 (InterPro:IPR019273); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF2296) (TAIR:AT4G31080.1); Has 315 Blast hits to 309 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 149; Fungi - 81; Plants - 79; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:10347340..10349566 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45928.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.97 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.61 | ||||||||||||||||||||||||||||
| Length | 408 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAVGEKEHEG TVVESGGEKN DSAVVLSASG EKKTTKRKGL FSRLWNAIFR VRGDDFEKRL KNISKEEATV RNRMKRRSIT RRNFIRNLIA FSVFFEVIAV 101: SYAIMTTRDE DLDWKLRSFR ILPMFLLPAV AFLLYSSLVG FWRMCDRRDQ HTLEKLQAEM LGKINELKER TNYYITQQLI QRYDPDPAAK AAAATVLASK 201: LGAESGLKVF VGDESQLEPT AGKNNAKHSG GLRNRKQTNT RGNSAETTPI HHSDNESNHS GTSERITGTE QNQQMVFEHY NPQEYAAHDG SWISRIAALL 301: VGEDPSQSYA LICGNCRMHN GLARKEDFPY ITYYCPHCRA LNKPKHSEEH SLIAPADTLP KVSLKPMESE VINSSSSTSE RGNSPIPLLH TPEIVEEVPE 401: TAENETPN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)