AT1G73200.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Putative integral membrane protein conserved region (DUF2404) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Putative integral membrane protein conserved region (DUF2404); FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2404, transmembrane (InterPro:IPR019411), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: Putative integral membrane protein conserved region (DUF2404) (TAIR:AT1G17820.1); Has 453 Blast hits to 336 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 134; Fungi - 247; Plants - 53; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:27523454..27526573 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 87055.60 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.19 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.52 | ||||||||||||||||||||||||||||
| Length | 779 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVSFTGFAFV FGILLGILAI VTAEVVGFLY LLKRLNRKRD RQESNSSSDP NFKSFDPRQS IDFSLNKQGV IWILELDENV KDWMKEKLPK EQKKKRVDLL 101: EVHPVRRFAR IKDHKLILSD SLDGPQTPIT LKGCFVDAVS GSGPTRKWAK RFPIQVESKT SVLYKGNRVF YIFLETSWEK ESWCKALRLA ACENQERFIW 201: STKLKEDFRN YLASLNAAYP SFMKPSAGFS FESLDKGLKA DGPSSKVRLI WKKFSKKCST KVNFPPSIRD DKKTSSRSYQ DSQSTGSSGK STSARRMQDN 301: IPEETDVQVI SRSWSHSSHA SDVDSEDKSF DEGTLALNVV LSRLFFDVKQ NTVLKNLVRE RIQRIMSNMR IPSYIGELIC CDVDIGNLPP YIHGTRILPM 401: EMNGVWAFEI DIEYTGGAGL EVETRVDARE EDLQKGIAEG KLQPNSAGDV PPDLLEGLAD FEKQLNVPGG TVDAQDVKSG GTDKADESKG PKGTKTGSSN 501: GSKWKSMLKN IVEQVSQVPI TLSIGVSSLR GTLCVHMKPP PSDQLWFGFT SMPDIEFNLV SSVGEHKITN SHVAMFLVNR FKTAIRDVMV LPNCESVTIP 601: WMTAEKDDWV ERNVAPFMWL NQDSTSDREN LEAAEAKSKA DKPPTSEQMQ KTVNIPQKPR IEEESVSADT APSANSIALL VESDKSLEEL KTPLLESSEK 701: HDTIARGGSA GDIIPGIGQS PSMSTVSGEE DDSNSKGKKM GAAKARMFDF RKKVGEKFEE KKRHVEEKSR QIVEKMRGP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)