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AT3G07790.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30962257 (2019): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DGCR14-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DGCR14-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear protein DGCR14 (InterPro:IPR019148); Has 334 Blast hits to 326 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 141; Fungi - 84; Plants - 40; Viruses - 21; Other Eukaryotes - 48 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YVA8eggNOG:KOG2627EMBL:AC009176EMBL:AC013483
EMBL:CP002686EnsemblPlants:AT3G07790EnsemblPlants:AT3G07790.1entrez:819970
GeneID:819970Gramene:AT3G07790.1hmmpanther:PTHR12940HOGENOM:HOG000241874
InterPro:IPR019148KEGG:ath:AT3G07790KO:K13118OMA:KKEKYGY
Pfam:PF09751PhylomeDB:Q9S7V6Proteomes:UP000006548RefSeq:NP_187436.1
STRING:3702.AT3G07790.1TAIR:AT3G07790UniGene:At.27564UniProt:Q9S7V6
Coordinates (TAIR10) chr3:+:2487491..2489017
Molecular Weight (calculated) 56814.30 Da
IEP (calculated) 9.56
GRAVY (calculated) -0.94
Length 508 amino acids
Sequence (TAIR10)
(BLAST)
001: MFLSPGHSPR QISSPSPSSY SDDTLRSTPR SSSSEIIPRN PRKRMRVLDE DAYVEAIEKI IERDYFPDIT KLRDRLDWIQ AVKTRDPIQI RDAQLKIIER
101: RGKKANHHVG DTEGKTQTPG STFLRNFTPL DEFDGKTPRT PGVSGREFHG VEVDAGDGDE DIDLNLSLDE FFRRYTSEDN ESFSKILEKV NRKKKEKYGF
201: LLEGEKEDGK SIEDVKRDRI TDGYGTSDQP PSTLEGWKYT AKNLLMYHPA DRGEAPLTEA ERAVRLLGLT KEIVKGNTRF HGKTMDSRPR EDGSVEILYT
301: PIAGSSPMHI SGRDRDKSKR YDLDDLRKTP NPFYVESDKR ADNGYSFVRT PSPAPGLDES PFITWGEIDG TPMRLDLEDT PIDIGGSADG PHYNIPSAPP
401: RDVRAHSLSR DASRKLRERS NSMFKKPPLP SPHRSGSASP NVRTLSPAAQ KFFRKAIAKS SSTVDESLRA SYRGASPRGA SPGAVTPKSV RSISRFGKDG
501: TSSETRSP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)