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AT1G29340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.995
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plant U-box 17
Curator
Summary (TAIR10)
Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity. It is required for cell death and full resistance specified by Arabidopsis RPM1 and RPS4 resistance proteins against Pseudomonas syringae pv tomato.
Computational
Description (TAIR10)
plant U-box 17 (PUB17); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: defense response to fungus, incompatible interaction, defense response, incompatible interaction, apoptosis, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G01830.1); Has 4178 Blast hits to 3456 proteins in 244 species: Archae - 2; Bacteria - 18; Metazoa - 476; Fungi - 388; Plants - 2844; Viruses - 3; Other Eukaryotes - 447 (source: NCBI BLink).
Protein Annotations
BRENDA:2.3.2.B10EC:6.3.2.-eggNOG:ENOG410ITMBeggNOG:ENOG410YC2C
EMBL:AC068667EMBL:AY064045EMBL:AY150512EMBL:CP002684
EnsemblPlants:AT1G29340EnsemblPlants:AT1G29340.1entrez:839808Gene3D:1.25.10.10
Gene3D:3.30.40.10GeneID:839808Genevisible:Q9C7R6GO:GO:0004842
GO:GO:0009814GO:GO:0016567GO:GO:0016874Gramene:AT1G29340.1
hmmpanther:PTHR23315hmmpanther:PTHR23315:SF76HOGENOM:HOG000238412InParanoid:Q9C7R6
IntAct:Q9C7R6InterPro:IPR000225InterPro:IPR003613InterPro:IPR011989
InterPro:IPR013083InterPro:IPR016024KEGG:ath:AT1G29340OMA:ENRAYIA
PaxDb:Q9C7R6Pfam:PF00514Pfam:PF04564Pfam:Q9C7R6
Pfscan:PS50176Pfscan:PS51698PhylomeDB:Q9C7R6PIR:A86416
PRIDE:Q9C7R6PRO:PR:Q9C7R6PROSITE:PS50176PROSITE:PS51698
ProteinModelPortal:Q9C7R6Proteomes:UP000006548RefSeq:NP_174228.1SMART:SM00185
SMART:SM00504SMR:Q9C7R6STRING:3702.AT1G29340.1SUPFAM:SSF48371
SUPFAM:SSF57850TAIR:AT1G29340tair10-symbols:ATPUB17tair10-symbols:PUB17
UniGene:At.17411UniGene:At.27415UniPathway:UPA00143UniProt:Q9C7R6
Coordinates (TAIR10) chr1:+:10264412..10266601
Molecular Weight (calculated) 79838.00 Da
IEP (calculated) 7.52
GRAVY (calculated) -0.03
Length 729 amino acids
Sequence (TAIR10)
(BLAST)
001: MASAAIFSSL RRRRSPSLEA FLAPVDLSGV ALVQTLASIS SEVVSCFTSV RFSFQRKNAR SLIRKIEIFV VLFEFLVDSN WGSTTTRTRA RRRSKSSVSE
101: STALLCLKEL YLLLYRSKIL VDYCAQSSKL WLLLQNPSIS GYFHDLNQEI STLLDVLPVN DLGLSDDIRE QIELLQRQSR KARLYIDKND ESLRESFYSF
201: LDGFENGKIP SSVDLRMFFV EKLGIRDSKS CRSEIEFLEE QIVNHDGDLE PTGSVINGFV AITRYCRFLL FGFEEDGMEW WIENNPKKPR KGFVAQEIGD
301: TFITVPKDFV CPISLDLMTD PVIISTGQTY DRNSIARWIE EGHCTCPKTG QMLMDSRIVP NRALKNLIVQ WCTASGISYE SEFTDSPNES FASALPTKAA
401: VEANKATVSI LIKYLADGSQ AAQTVAAREI RLLAKTGKEN RAYIAEAGAI PHLCRLLTSE NAIAQENSVT AMLNLSIYEK NKSRIMEEGD CLESIVSVLV
501: SGLTVEAQEN AAATLFSLSA VHEYKKRIAI VDQCVEALAL LLQNGTPRGK KDAVTALYNL STHPDNCSRM IEGGGVSSLV GALKNEGVAE EAAGALALLV
601: RQSLGAEAIG KEDSAVAGLM GMMRCGTPRG KENAVAALLE LCRSGGAAVA EKVLRAPAIA GLLQTLLFTG TKRARRKAAS LARVFQRREN AAMRSGVYGF
701: VGNTNGNRDG GFTTDVSVPI SISISVPVL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)