suba logo
AT4G17230.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.742
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SCARECROW-like 13
Curator
Summary (TAIR10)
Encodes a scarecrow-like protein (SCL13). Member of GRAS gene family.
Computational
Description (TAIR10)
SCARECROW-like 13 (SCL13); CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: scarecrow-like 5 (TAIR:AT1G50600.1); Has 2512 Blast hits to 2467 proteins in 302 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 2508; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:12728eggNOG:ENOG410IGV7eggNOG:ENOG411183FEMBL:AF036308
EMBL:AF419570EMBL:AK226549EMBL:AL161546EMBL:BT001076
EMBL:CP002687EMBL:Z97343EnsemblPlants:AT4G17230EnsemblPlants:AT4G17230.1
entrez:827435ExpressionAtlas:Q9M0M5GeneID:827435Genevisible:Q9M0M5
GO:GO:0005634GO:GO:0005737GO:GO:0006351GO:GO:0006355
Gramene:AT4G17230.1hmmpanther:PTHR31636hmmpanther:PTHR31636:SF45HOGENOM:HOG000238577
InParanoid:Q9M0M5InterPro:IPR005202InterPro:IPR030005KEGG:ath:AT4G17230
PANTHER:PTHR31636:SF45PaxDb:Q9M0M5Pfam:PF03514Pfam:Q9M0M5
Pfscan:PS50985PIR:C71441PIR:T51241PRIDE:B9DGM6
PRIDE:Q9M0M5PRO:PR:Q9M0M5PROSITE:PS50985ProteinModelPortal:Q9M0M5
Proteomes:UP000006548RefSeq:NP_193456.4STRING:3702.AT4G17230.1TAIR:AT4G17230
tair10-symbols:SCL13UniGene:At.25323UniProt:B9DGM6UniProt:Q9M0M5
Coordinates (TAIR10) chr4:-:9661218..9662807
Molecular Weight (calculated) 58458.30 Da
IEP (calculated) 5.73
GRAVY (calculated) -0.23
Length 529 amino acids
Sequence (TAIR10)
(BLAST)
001: MQTSQKHHSA AGLHMLYPQV YCSPQFQAKD NKGFSDIPSK ENFFTLESST ASGSLPSYDS PSVSITSGRS PFSPQGSQSC ISDLHHSPDN VYGSPLSGVS
101: SLAYDEAGVK SKIRELEVSL LSGDTKVEEF SGFSPAAGKS WNWDELLALT PQLDLKEVLV EAARAVADGD FATAYGFLDV LEQMVSVSGS PIQRLGTYMA
201: EGLRARLEGS GSNIYKSLKC NEPTGRELMS YMSVLYEICP YWKFAYTTAN VEILEAIAGE TRVHIIDFQI AQGSQYMFLI QELAKRPGGP PLLRVTGVDD
301: SQSTYARGGG LSLVGERLAT LAQSCGVPFE FHDAIMSGCK VQREHLGLEP GFAVVVNFPY VLHHMPDESV SVENHRDRLL HLIKSLSPKL VTLVEQESNT
401: NTSPFLSRFV ETLDYYTAMF ESIDAARPRD DKQRISAEQH CVARDIVNMI ACEESERVER HEVLGIWRVR MMMAGFTGWP VSTSAAFAAS EMLKAYDKNY
501: KLGGHEGALY LFWKRRPMAT CSVWKPNPN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)